Nlat014235.1
Basic Information
- Insect
- Nomada lathburiana
- Gene Symbol
- Sry-delta
- Assembly
- GCA_963667235.1
- Location
- OY763909.1:11174775-11176097[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.5e-10 9e-07 28.5 0.1 4 38 22 55 21 60 0.90 2 3 2.7 3.8e+03 -2.3 0.0 30 38 83 91 83 96 0.83 3 3 5.7 8e+03 -3.3 0.0 30 41 112 123 112 125 0.73
Sequence Information
- Coding Sequence
- ATGGGAATTGCTCGGCATCGGGCGTACCCTTGGCAAAGAGGTTACGAGAGACAAGAAATCGAGCACATAAAATTGGCCGTCGAAGCAGTGGCCAATGGACTATCGCTGAGGAAAGCAGCCAAAATGTTCTGCATGTCGAAGTCTGTTCTTCACCGTTACAGCAAATCGGAGCAGCGTTCGGCGGGCTACCTGAACTGCCAGAGAGTCACCTACCCGTGCAAGAACTGTGGCAAAGTATACAATTACTACTCCAGCTTGGCGAGGCATTTGAAGCACGAGTGCGGCGTGGAACCAAAGTTCCACTGTCCCCTCTGCCCTTACAGAACGAAGCACAAGTCCAGCTTGAATACTCACCTCAACGGCAGGCATATGAAGCTCCTGAGCGAATTCTACGCGATGCCAAACGGAAACAAGCTGTCCCCATCCATGGATACCGGGAATTAA
- Protein Sequence
- MGIARHRAYPWQRGYERQEIEHIKLAVEAVANGLSLRKAAKMFCMSKSVLHRYSKSEQRSAGYLNCQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYAMPNGNKLSPSMDTGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00142117;
- 90% Identity
- iTF_01069578;
- 80% Identity
- iTF_01069275;