Nfab000087.1
Basic Information
- Insect
- Nomada fabriciana
- Gene Symbol
- Sry-delta
- Assembly
- GCA_907165295.1
- Location
- OU015691.1:724055-725346[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-09 1.2e-06 28.3 0.1 3 38 46 80 46 85 0.90 2 2 7.1 5.6e+03 -2.7 0.0 30 38 108 116 108 120 0.84
Sequence Information
- Coding Sequence
- ATGTACCTACTTTGGCAGGTACAAGGAATTTCGTTTGAATGGGAATTGCTCGGCATCGGGCGTACCCTTGGCAGACGGTTTATCAAAGGCGGAAGACCGAGGTATTTCGGAAGAGGTTACGAGCAACAAGAAATCGACCACATAAAATTGGCCGTCGAAGCAGTGGCCAATGGACTATCGTTGAGGAAAGCAGCCAAAATGTTCTGCATGTCCAAGTCTGTTCTTCACCGTTACAGCAAATCGGAGCAGCGTTCGGCGGGCTACCTGAACTGCCAGAGAGTCACCTACCCGTGCAAGAACTGTGGCAAAGTGTACAATTACTACTCCAGCTTGGCGAGGCATTTGAAGCACGAGTGCGGCGTGGAACCAAAGTTCCACTGTCCCCTCTGCCCTTACAGAACGAAGCACAAGTCCAGCTTGAATACTCACCTCAACGGCAGGCATATGAAGCTCCTGAGCGAATTCTACGCGATGCCAAACGGAAACAAGCTGTCCCCATCCATGGACACCGGGAATTAA
- Protein Sequence
- MYLLWQVQGISFEWELLGIGRTLGRRFIKGGRPRYFGRGYEQQEIDHIKLAVEAVANGLSLRKAAKMFCMSKSVLHRYSKSEQRSAGYLNCQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYAMPNGNKLSPSMDTGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00142117;
- 90% Identity
- iTF_01069578;
- 80% Identity
- iTF_01065870;