Nfer006710.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomada ferruginata
Gene Symbol
-
Assembly
GCA_963583965.1
Location
OY757217.1:8223322-8228486[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00087 0.096 13.6 0.3 2 23 175 197 174 197 0.91
2 18 0.36 40 5.4 0.3 1 23 209 232 209 232 0.95
3 18 0.04 4.5 8.4 3.5 1 23 245 268 245 268 0.93
4 18 0.00015 0.016 16.1 5.8 1 23 274 296 274 297 0.95
5 18 0.0063 0.7 10.9 0.4 3 23 304 325 302 325 0.94
6 18 0.00072 0.08 13.9 1.5 1 23 330 353 330 353 0.98
7 18 3.2e-07 3.6e-05 24.4 0.4 2 23 360 381 359 381 0.96
8 18 2.7e-06 0.0003 21.5 1.3 1 23 387 409 387 409 0.97
9 18 3.5e-05 0.0039 18.0 1.0 1 23 415 437 415 437 0.98
10 18 0.003 0.34 11.9 3.4 2 23 551 572 550 572 0.97
11 18 0.00022 0.024 15.5 2.7 1 23 574 597 574 597 0.96
12 18 0.0028 0.31 12.0 0.9 1 23 602 625 602 625 0.96
13 18 0.00032 0.035 15.0 2.2 1 23 631 654 631 654 0.95
14 18 0.0012 0.13 13.2 2.0 2 23 661 683 660 683 0.95
15 18 0.0043 0.48 11.4 0.3 1 23 688 710 688 710 0.96
16 18 0.00069 0.076 14.0 0.5 3 23 718 737 717 737 0.98
17 18 5.6e-06 0.00062 20.5 0.1 1 23 743 765 743 765 0.97
18 18 0.00053 0.059 14.3 0.4 1 23 771 793 771 793 0.97

Sequence Information

Coding Sequence
ATGAAAAAATGGCAGATCCTGGAATTCGACGGAAAGCCATACTACGCGTTTGTACCTGAAGGCGACACGCCAATGGCCGAGGAGGACATACCCGAACAGATAGACGAGGCCGCGAGTAAGGAAGAGAAGGAGAATAACGTCAAGGTCGAGTGTTTGTACAACGACGAGGATCTGCAGTACGACTCGTCCGACGAGAAGCTGTACGAAGAGGAGCACCTGCTAAACGGAAGCTCCGAGCAGAGGGAAGAGGACGAGGACGTGAAGCCGATGATCTTGAACGGCAGCATCGATGGAGAAAACGACAAGACAATTGGCGATCTGTACCAGGTGAAGGTTCAAGGTAGCATGGTGACGATAGAGAAGCTCATGTCCAATGAGGATGATCAGTGTGACCAGGATCAAGACCAGGACCAAGTGGAGGAGGTGGAATACTTGGAGGAGGAGATGTTGGAGTCCGTGAACAATCATTCGACGCCAACGAAGACGCGCCGAAAGGTATCGAGGAGTGCGGCCGGTGCACTGAAGTGCAAGGTATGCTCGGAGATGTTCAGTTCGGCGATTTCGTTCAGGAAGCACGTGGCGTGGACGCACAAGAAGAAGGTGTGCATACAGGAGGACGGGGCGTACATATGCGCGGTCTGCGACTACAGGACGTTGAAGAAGAGCCTGTTCGCCGCTCATTTGGAAAGGAAGCACGAGACCTGGTCGCGCAAACGGCCCAACAACGTGCTGTTCCCGTGTGCCGCATGCGGGTTCGTTTGCAGATCGAAACACTCGTTGCAGTCGCACTTCATCAGGAAGCACACCGACCGGTACGAGCACCAGTGTAAATTCTGCCCGAAGAAGTTCAAAGTGAAAGGCGACCTGACGAACCACGTCCGATTCCACCACAAGGAGAAACCGATCAACTGCGACGTCTGCGGGAAATTGTGCCAAAACAGCGGCTCCCTCTACGTTCACCAGAAGTGGGCTCATTACAAACCCAAATACGAGTGTCACATTTGCAAGAGGCGCATGGTCACGCAGGAGAACCTAGATCAACATTTACTCACGCAGCACGAGAAGAGGGAGAAGATCGTCTGCGCCGAATGCGGCAAGACGTTCACCAAGAAGGACTCGTTTAAGAGGCACATGGCTGTGCACACCGGGTGCAAACCTCATTCCTGTCTTATATGCAACAAACCGTTTGCGAGGAGGTCGCAGTTACGTCAGCACTTGCTCATCCATACCGGGAAGAGGCCGTTCGTTTGCGATATCTGCGGCAAAGCGTTCACGCAGAAGCCCGGTCTGATTTGTCACAGGAAGACGCATCCGGGGCCCCATCCCCCGTTGCCGGTTATGCCGATCGCGGATATCGTGAAGGAATTCACGGAGGGATACGTTCAGGAGATAAACGCGAGAGAGAACGAGGAGAGAATCGAAGAGGAAGCAATCCTGGATCCCCTGAGCGAAGAATTCAAATCGGATTCCCACTCGAACTCCCTGATAGATTTCCCCGAAGGATATATAAATTGGATCGACAAGGAGAACTTCGATGTCGTGTCCGAGAGCCAAGAAGAAGAGAACGACCTGAACGATCTACCAGAAACAAACGCCAGGCTGTCTCTGTCGAGCAACTCTAACGATCGATACGAAAAGAAAGTTCGCTTAGAATGCGACCACTGTCGACGCAAGTTCCTGAAGAAGAGCAACCTGGCCGAGCACTTGAAGAAACACCGTCACAAATGCACCGACTGTCCGAAGACATTCAGGCTTCGTCGATACCTGTCCTCTCACGTGGAAAAGATTCACCGCCGTCAGCTGTACGATTGCAGCGTTTGCGAGTACAAGAGCAACAACAAAGGCACCCTGAAGAACCACTACATCCGTCTGCACACGACCAGCTACAACTTCGCCTGCGACACTTGCGGCAAGCAGTTCAAAATCAAGAAAGCGCTGAATCACCACGTGAAACAAAATCACAGCGACGCACCGCCCATAGTGTGCGACGTTTGCGGTCATTTCAGTAAAAATCTGCACGCATTGAAGGCCCACATGAAGTACAGGCACTACAAGCCCGAGTTCGTCTGTCGAATCTGTCGGAGGGGCATGACCACGCAGGAGAATCTCGAGCAGCATTTGACGTGGCACGAGACGAGGGAGAAGGTGTTGTGCCCCACCTGCGGGAAGAGGTTCAGGGGTCGCGATCTTGACTCTCACATGCGTGTGCACACGGGCGTGAAGCCGTTCCCCTGCCCCGTTTGCGGGAAATCGTTTCGACGGCAAACTGCTCAGGAACAACACGTATTGATTCACACGGGGAAGAGGCCATACGTATGCGACATTTGTGGCCAGGCGTTCGCACAGAAGCCGGGGCTAATTTGCCACAGGAAACGTCATCCTGGACCGCTGCCGCCATTGCCCGTCGTCTCGATCAAGAACATCGTGACGGAGTTCACGAAGGAGTACACCATGAAGAATACGATTGTCAAGATCGAATGA
Protein Sequence
MKKWQILEFDGKPYYAFVPEGDTPMAEEDIPEQIDEAASKEEKENNVKVECLYNDEDLQYDSSDEKLYEEEHLLNGSSEQREEDEDVKPMILNGSIDGENDKTIGDLYQVKVQGSMVTIEKLMSNEDDQCDQDQDQDQVEEVEYLEEEMLESVNNHSTPTKTRRKVSRSAAGALKCKVCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRPNNVLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPINCDVCGKLCQNSGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEINARENEERIEEEAILDPLSEEFKSDSHSNSLIDFPEGYINWIDKENFDVVSESQEEENDLNDLPETNARLSLSSNSNDRYEKKVRLECDHCRRKFLKKSNLAEHLKKHRHKCTDCPKTFRLRRYLSSHVEKIHRRQLYDCSVCEYKSNNKGTLKNHYIRLHTTSYNFACDTCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKEYTMKNTIVKIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00087367; iTF_00085608; iTF_00089008; iTF_00084729; iTF_00361064; iTF_00962654; iTF_00961973;
90% Identity
-
80% Identity
-