Mlag005013.1
Basic Information
- Insect
- Megachile lagopoda
- Gene Symbol
- -
- Assembly
- GCA_036983795.1
- Location
- CM072788.1:7399611-7406557[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00092 0.11 13.6 0.3 2 23 200 222 199 222 0.91 2 18 0.38 45 5.4 0.3 1 23 234 257 234 257 0.95 3 18 0.043 5 8.4 3.5 1 23 270 293 270 293 0.93 4 18 0.00015 0.018 16.1 5.8 1 23 299 321 299 322 0.95 5 18 0.0067 0.78 10.9 0.4 3 23 329 350 327 350 0.94 6 18 0.00076 0.088 13.9 1.5 1 23 355 378 355 378 0.98 7 18 3.4e-07 4e-05 24.4 0.4 2 23 385 406 384 406 0.96 8 18 2.9e-06 0.00033 21.5 1.3 1 23 412 434 412 434 0.97 9 18 3.7e-05 0.0043 18.0 1.0 1 23 440 462 440 462 0.98 10 18 0.038 4.4 8.5 5.2 2 23 566 587 565 587 0.97 11 18 8.3e-05 0.0096 16.9 2.0 1 23 589 612 589 612 0.96 12 18 0.003 0.34 12.0 0.9 1 23 617 640 617 640 0.96 13 18 0.00013 0.015 16.3 2.2 1 23 646 669 646 669 0.96 14 18 0.0012 0.14 13.2 2.0 2 23 676 698 675 698 0.95 15 18 0.0082 0.95 10.6 0.3 1 23 703 725 703 725 0.96 16 18 0.00073 0.084 13.9 0.5 3 23 733 752 732 752 0.98 17 18 5.9e-06 0.00068 20.5 0.1 1 23 758 780 758 780 0.97 18 18 0.00056 0.065 14.3 0.4 1 23 786 808 786 808 0.97
Sequence Information
- Coding Sequence
- ATGAAGAAGTGGCAGATCTTGGAGTTCGACGGGAAACCTTACTACGCTTTTGTACCTGAAGGTGAAATACCGTTATACGAGGAGGATATCCCGGAACAAGTCGACGAGATAGATCACGAAGAGTGCAAGGACCTCGTGAAAGTGGAGTGCTTCTACGACGAGGACCTGCAGTACGACTCCACGGACGAGAAGTTGTACGAAGAAGAGCAACTGTTGGACCCGAGTACCGAGCAAAGGGACGAGGAGGATGACGTGAAACCCATCATCCTAAACGGCACCATCGACGGTGACAACGACAAGGCGATCGGGGACCTGTACCAGGTCAAGGTCCACGGCAGCATGGTGACCATAGAGAAGCTGATGTCCAACGAGATGGACGAGAAGGTGGACCCGGTCGAGTTCCAACCCGAAGAGCAGGAAGAGCAAGACGAAACGTACAACTATCAAGAACAACTCGAACAAGTCGACCAGGTAGACCAAGGTGACCAAGAAGAGCAGGTGGAGTACCTGGAAGAAGAGATCCTAGAGTCCATAAACAACCATTCCTCCCCGACTAAGACTCGCAGAAAGGTGTCGAAGAACGCAGGTGGCGCGTTGAAGTGCAAGGTCTGCTCCGAGATGTTCAGCTCTGCCATATCCTTCAGGAAGCACGTGGCGTGGACGCACAAGAAGAAGGTGTGCATCCAGGAGGACGGCGCGTACATATGCGCTGTCTGCGACTACAGGACCCTCAAAAAGAGTCTGTTCGCCGCGCACCTGGAAAGAAAACACGAGACATGGTCCAGGAAGCGACCCAACAACATGTTGTTCCCGTGCGCAGCTTGCGGGTTCGTGTGTAGATCTAAGCACTCGTTGCAGTCGCACTTCATCAGGAAGCATACCGACCGGTACGAGCACCAGTGCAAGTTCTGCCCGAAGAAGTTCAAGGTGAAGGGCGACCTGACCAACCACGTGCGATTTCATCACAAGGAGAAGCCGATCAATTGCGACGTCTGCGGTAAACTGTGCCAGAACAGTGGCTCCCTTTACGTCCATCAGAAGTGGGCGCACTATAAGCCGAAGTACGAGTGCCACATATGCAAACGACGCATGGTCACGCAGGAGAACCTGGACCAGCACTTGTTGACCCAGCATGAGAAGAGGGAGAAGATCGTGTGCGCAGAATGTGGAAAGACGTTCACGAAAAAGGACTCGTTCAAGAGGCACATGGCGGTGCACACAGGATGCAAACCACATTCCTGCCTCATCTGCAACAAACCGTTCGCCAGGAGGTCACAACTGCGTCAGCATTTGCTCATTCACACCGGGAAGAGACCGTTCGTGTGTGACATTTGTGGCAAAGCGTTCACACAGAAACCTGGACTCATCTGCCACAGGAAGACGCATCCTGGACCACATCCTCCGTTACCCGTCATGCCCATCGCGGATATCGTGAAGGAGTTCACCGAAGGATACGTGCAGGAAATTAACGCGAGAGAGAGCGAGGAGAGAATCGAGGAGGAGGCAATCCTGGATCCTCTGAGCGAAGAGGACTTCAAGCCCGACTCGCACATCATATCGACGATAGATTTCTCCGAGAGTTTAGCTAGCTGGATCGATAAGGAGAACTTCGAGTCGATCGAAAACAACCTCGAAAGAGTTCAGGAAGACTGCAGACTATCCTGCAGTCAAACAACCGACGAAAAAGTACCCCTAGAGTGCGACCACTGTCGTCACAAGTTCCTGAAGAAGAGCAACCTGGCTGAGCACTTGAAGAAGCACAGACACAGGTGTCCAGATTGCCCGAAGACCTTCAGACTCCGTCGATACCTGGCTTCCCATACGGAGAAGATGCACAGACGTCAGGTGTACGACTGCAGCGTGTGCGAGTACAAGAGCAACAACAAGGGCACCCTGAAGAATCACTACATACGGCTACACACCAGCAGCTACAACTTCTCCTGCGACGTCTGCGGCAAGCAGTTCAAGATAAAAAAGGCCTTGAACCACCACGTGAAGCAGAACCACAGCGATTCGCCCCCGATCGTCTGCGACGTGTGTGGACATTTCAGCAAGAACCTACATGCTCTGAAGGCACACATGAAGTACAGACATTACAAGCCGGAGTTCATCTGCAGGATCTGCAGAAGGGGGATGACGACTCAGGAGAATTTGGAGCAACACTTAACGTGGCACGAGACTAGAGAGAAAGTCCTGTGTCCCACATGTGGGAAGAGGTTTCGAGGACGCGATCTGGATTCACATATGAGGGTGCACACCGGGGTGAAACCGTTCCCGTGTCCCGTGTGCGGGAAATCCTTCAGGAGGCAGACTGCGCAGGAACAACACGTGTTGATTCATACGGGCAAGAGGCCGTATGTGTGCGACATATGTGGACAGGCTTTCGCGCAGAAACCGGGTCTTATTTGTCATAGGAAGAGACATCCCGGTCCTCTGCCTCCTCTTCCGGTTGTGTCCATCAAGAATATCGTCACGGAGTTCACGAAGGAGTATACTATGAAGAATACTATGATCAAGATCGAGTGA
- Protein Sequence
- MKKWQILEFDGKPYYAFVPEGEIPLYEEDIPEQVDEIDHEECKDLVKVECFYDEDLQYDSTDEKLYEEEQLLDPSTEQRDEEDDVKPIILNGTIDGDNDKAIGDLYQVKVHGSMVTIEKLMSNEMDEKVDPVEFQPEEQEEQDETYNYQEQLEQVDQVDQGDQEEQVEYLEEEILESINNHSSPTKTRRKVSKNAGGALKCKVCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRPNNMLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPINCDVCGKLCQNSGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEINARESEERIEEEAILDPLSEEDFKPDSHIISTIDFSESLASWIDKENFESIENNLERVQEDCRLSCSQTTDEKVPLECDHCRHKFLKKSNLAEHLKKHRHRCPDCPKTFRLRRYLASHTEKMHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTSSYNFSCDVCGKQFKIKKALNHHVKQNHSDSPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICRICRRGMTTQENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKEYTMKNTMIKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01066410;
- 90% Identity
- iTF_00962654;
- 80% Identity
- -