Atri002070.1
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- -
- Assembly
- GCA_952773225.1
- Location
- OX731548.1:9485029-9490297[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.001 0.1 13.6 0.3 2 23 197 219 196 219 0.91 2 18 0.43 43 5.4 0.3 1 23 231 254 231 254 0.95 3 18 0.047 4.8 8.4 3.5 1 23 267 290 267 290 0.93 4 18 0.00017 0.017 16.1 5.8 1 23 296 318 296 319 0.95 5 18 0.0074 0.75 10.9 0.4 3 23 326 347 324 347 0.94 6 18 0.00084 0.085 13.9 1.5 1 23 352 375 352 375 0.98 7 18 3.8e-07 3.8e-05 24.4 0.4 2 23 382 403 381 403 0.96 8 18 3.2e-06 0.00032 21.5 1.3 1 23 409 431 409 431 0.97 9 18 4.1e-05 0.0042 18.0 1.0 1 23 437 459 437 459 0.98 10 18 0.0018 0.18 12.9 2.1 2 23 565 586 564 586 0.97 11 18 0.0013 0.13 13.3 1.3 1 23 588 611 588 611 0.95 12 18 0.0033 0.33 12.0 0.9 1 23 616 639 616 639 0.96 13 18 9.6e-05 0.0097 16.8 1.6 1 23 645 668 645 668 0.95 14 18 0.0014 0.14 13.2 2.0 2 23 675 697 674 697 0.95 15 18 0.0087 0.88 10.7 0.4 1 23 702 724 702 724 0.96 16 18 0.0008 0.081 13.9 0.5 3 23 732 751 731 751 0.98 17 18 6.5e-06 0.00066 20.5 0.1 1 23 757 779 757 779 0.97 18 18 0.0011 0.11 13.5 0.4 1 23 785 807 785 807 0.97
Sequence Information
- Coding Sequence
- ATGAAAAAATGGCAGATCCTCGAGTTCGACGGGAAGCCCTACTACGCGTTTGTACCTGAAGGCGACACGCCGTTGGCCGAGGACGACATACCAGAGCACTCGGGCGAGATCGAAGAGCAGAAACAGGGTCACGTGAAGGAGGAGTGCCTCTACAACGAGGACGATCTGCAGTATGACTCGTCGGATGAGAAACTGTACGAGGAGGAGCACCTCCTGAACGGTTCCATGGAACAGAGGGAGGACGAGGATGACGAGGACGTGAAACCGATACTCCTGAACGGCTCTCTGGAGGATGAGGCCGACAAGGCAATCGGGGATTTATATCAGGTGAAGGTTCAAGGTAGTATGGTGACCATTGAGAAACTAATGTCCAGGGAATTGAACCCGAAGACGGTGGAGTACCAGCAGGACACCGAGGAACAGGTGATGTACAACGAAGAGGATCCATTGGACCAGTCGGATCAAGGAGACCAAGATCAAGTGGAACAGGTGGAGTACTTGGAGGAAGCACTCTTAGAGTCTGCCAACAATCACGTGCCGCCCCCGAAGACGCGCAGAAAGATGTCCAGGAACACTGGGGGCGCTCTGAAGTGCAAGGTCTGCTCGGAGATGTTCAGCTCGGCGATATCGTTCAGGAAGCACGTGGCGTGGACGCACAAGAAGAAAGTGTGCATACAGGAGGACGGCGCGTACATCTGCGCCGTGTGCGACTACAGGACGCTGAAGAAGAGCCTGTTCGCCGCCCATTTGGAGAGAAAGCACGAGACCTGGTCCAGGAAACGGCCCAGCAACATGCTGTTCCCGTGCGCTGCCTGCGGGTTCGTCTGCAGATCGAAGCACTCGCTGCAGTCCCACTTCATAAGGAAGCACACCGACCGGTACGAGCACCAGTGCAAGTTCTGCCCGAAGAAGTTCAAAGTGAAAGGCGACCTGACGAATCACGTGCGGTTTCACCACAAAGAGAAGCCCATCAACTGCGACGTGTGCGGGAAACTGTGCCAGAACAGTGGCTCCCTCTACGTCCACCAGAAGTGGGCCCATTACAAGCCCAAGTACGAGTGTCACATATGCAAGAGGCGTATGGTCACGCAGGAGAATCTTGATCAACACTTGCTGACGCAGCACGAGAAGAGGGAGAAGATAGTGTGCGCGGAATGCGGCAAGACGTTCACCAAGAAGGATTCGTTCAAGAGGCACATGGCCGTTCACACAGGGTGCAAGCCACATTCCTGTCTCATATGCAACAAGCCTTTCGCCAGGCGGTCCCAGTTACGCCAACACCTGCTCATCCACACTGGCAAGAGGCCATTCGTATGCGACATCTGTGGCAAGGCCTTCACCCAGAAGCCTGGCCTGATCTGCCACAGGAAAACGCACCCTGGCCCGCATCCACCCTTACCCGTCATGCCTATCGCGGACATCGTGAAGGAGTTCACCGAAGGATACGTGCAGGAGATAAACGCGCGCGAGAACGAGGAGAGGATCGAGGAGGAAGCGATTCTGGATCCCCTCAGCGAGGAGTACAAGCCCGACTCGTGTTTGAGTTCAGCCGCCGAGTACGCGGACTGGATGGACAAAGAGAGCTTCGAGGTCGCGGGCGAGGAGCAGAACAATGCCGACAATGGGGCGAGATTATCCGACACGGAGGATCTTGATCGGCAGCCGAAGAAAAGAACGCTAACGACCCGTTTGGAGTGCGACCATTGTCGTCGCAGGTTCTTGAACAAGGGCAATCTCGCGGAGCACTTGAAGAAGCACAGGCACAAGTGCGCGGACTGCCCGAGGACGTTCAGGCTCCGTCGATACTTGGTTTCCCACGTCGACAAGATCCACCGGCGGCAGGTGTACGACTGCAGCGTGTGCGAGTACAAGAGTAACAACAAGGGCACCCTGAAGAACCACTACATACGGCTGCACACCAACAGCTACAATTTCGCCTGCGACATCTGCGGCAAGCAGTTCAAGATCAAGAAGGCCTTGAACCACCACGTGAAGCAGAACCACAGCGACGCGCCGCCGATCGTCTGCGACGTCTGCGGGCACTTCAGCAAGAACCTTCACGCGCTCAAGGCCCATATGAAGTACAGGCACTACAAGCCCGAGTTCATCTGCCGGATCTGTCGCAGAGGCATGACCACCAAGGAGAACCTCGAGCAACACCTCACGTGGCACGAGACCAGGGAGAAGGTACTGTGCCCGACCTGCGGCAAGAGGTTCCGAGGTCGCGACCTCGATTCCCACATGAGAGTGCACACCGGGGTCAAGCCTTTCCCGTGCCCCGTCTGCGGAAAGTCGTTCAGGAGGCAGACAGCTCAGGAGCAACACGTTCTTATCCACACTGGCAAGAGACCGTATATCTGCGACATATGTGGGCAGGCGTTCGCCCAGAAACCGGGGCTGATTTGTCACAGGAAACGTCATCCTGGACCACTTCCACCCCTACCTGTTGTGTCCATCAAGAACATCGTCACGGAGTTCACTAAGGAATATACTATGAAGAATGGGGTTATTAAGATCGAATGA
- Protein Sequence
- MKKWQILEFDGKPYYAFVPEGDTPLAEDDIPEHSGEIEEQKQGHVKEECLYNEDDLQYDSSDEKLYEEEHLLNGSMEQREDEDDEDVKPILLNGSLEDEADKAIGDLYQVKVQGSMVTIEKLMSRELNPKTVEYQQDTEEQVMYNEEDPLDQSDQGDQDQVEQVEYLEEALLESANNHVPPPKTRRKMSRNTGGALKCKVCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRPSNMLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPINCDVCGKLCQNSGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEINARENEERIEEEAILDPLSEEYKPDSCLSSAAEYADWMDKESFEVAGEEQNNADNGARLSDTEDLDRQPKKRTLTTRLECDHCRRRFLNKGNLAEHLKKHRHKCADCPRTFRLRRYLVSHVDKIHRRQVYDCSVCEYKSNNKGTLKNHYIRLHTNSYNFACDICGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICRICRRGMTTKENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKEYTMKNGVIKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01066410;
- 90% Identity
- iTF_00087367;
- 80% Identity
- -