Abic011815.1
Basic Information
- Insect
- Andrena bicolor
- Gene Symbol
- -
- Assembly
- GCA_960531205.1
- Location
- OY482665.1:50975931-50981158[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.001 0.087 13.6 0.3 2 23 199 221 198 221 0.91 2 18 0.43 36 5.4 0.3 1 23 233 256 233 256 0.95 3 18 0.048 4 8.4 3.5 1 23 269 292 269 292 0.93 4 18 0.00017 0.015 16.0 5.8 1 23 298 320 298 321 0.95 5 18 0.0076 0.63 10.9 0.4 3 23 328 349 326 349 0.94 6 18 0.00086 0.072 13.9 1.5 1 23 354 377 354 377 0.98 7 18 3.8e-07 3.2e-05 24.4 0.4 2 23 384 405 383 405 0.96 8 18 3.2e-06 0.00027 21.5 1.3 1 23 411 433 411 433 0.97 9 18 4.2e-05 0.0035 18.0 1.0 1 23 439 461 439 461 0.98 10 18 0.0018 0.15 12.8 2.1 2 23 567 588 566 588 0.97 11 18 0.00099 0.083 13.7 1.2 1 23 590 613 590 613 0.95 12 18 0.00096 0.08 13.7 0.9 1 23 618 641 618 641 0.96 13 18 0.00017 0.015 16.0 1.6 1 23 647 670 647 670 0.95 14 18 0.0014 0.12 13.2 2.0 2 23 677 699 676 699 0.95 15 18 0.0088 0.74 10.7 0.4 1 23 704 726 704 726 0.96 16 18 0.00082 0.069 13.9 0.5 3 23 734 753 733 753 0.98 17 18 6.6e-06 0.00056 20.5 0.1 1 23 759 781 759 781 0.97 18 18 0.0011 0.096 13.5 0.4 1 23 787 809 787 809 0.97
Sequence Information
- Coding Sequence
- atgaaaaaATGGCAGATCCTCGAGTTCGACGGGAAGCCCTACTACGCGTTTGTACCTGAAGGCGACACGCCGTTGGCCGAGGACGACATACCAGAGCACTCGGGCGAGATCATGAACGAAGAGCAGAAACAGGGCCACGTGAAGGAGGAGTGCCTCTACAACGAGGACGATCTGCAGTATGACTCGTCGGATGAGAAACTGTACGAGGAGGAGCACTTCCTGAACGGTTCCATGGAACAGAGGGAGGACGAGGATGACGAGGACGTGAAACCGATACTCCTGAACGGCTCTCTGGAGGACGAGGCCGACAAGGCGATCGGGGATTTATATCAGGTGAAGGTTCAAGGTAGCATGGTGACTATTGAGAAACTAATGTCCAGGGAGTTGAACCCGAAGACGGAGGAGTACCAGCAGGACACCGAGGAACAGATGATCTACAACGAAGATGATCCATTGGACCAGTCGGATCAAGGAGACCAAGATCAAGTGGAGCAGGTGGAGTACTTAGAGGAAGCACTCCTAGAGTCTGCCAACAATCACGTGCCGCCCCCGAAGACCCGCAGAAAGATGTCCAGGAACACTGGGGGCGCTCTGAAGTGTAAGGTCTGCTCGGAGATGTTCAGCTCGGCGATATCGTTCAGGAAGCACGTGGCGTGGACGCACAAGAAGAAGGTATGCATACAGGAGGACGGCGCGTACATCTGCGCCGTGTGCGACTACAGAACGCTGAAGAAGAGCCTGTTTGCCGCCCATTTGGAGAGAAAGCACGAGACCTGGTCCCGGAAACGGCCGAGCAACATGCTGTTCCCGTGCGCTGCCTGCGGGTTCGTCTGCAGATCGAAGCACTCGCTGCAGTCCCACTTCATAAGGAAGCACACCGACCGGTACGAGCATCAGTGCAAGTTCTGCCCGAAGAAGTTCAAAGTGAAAGGCGACCTGACGAATCACGTGCGGTTTCACCACAAAGAGAAGCCCATCAACTGCGACGTGTGCGGGAAACTGTGCCAGAACAGTGGTTCCCTCTACGTCCACCAGAAATGGGCCCATTACAAGCCCAAGTACGAGTGTCACATATGCAAGAGGCGTATGGTCACGCAGGAGAATCTTGATCAACACTTGCTGACGCAGCACGAGAAGAGGGAGAAGATAGTGTGCGCGGAATGCGGCAAGACGTTCACCAAGAAGGACTCGTTCAAGAGGCACATGGCCGTCCACACAGGGTGCAAGCCACATTCCTGTCTCATATGCAACAAGCCTTTCGCCAGGCGGTCCCAGTTGCGCCAACATCTGCTCATCCACACTGGCAAGAGGCCATTCGTATGCGACATCTGTGGCAAGGCCTTCACTCAGAAGCCTGGCCTGATCTGCCACAGGAAAACGCACCCTGGCCCGCATCCACCTTTACCCGTCATGCCTATCGCGGACATCGTCAAGGAGTTCACCGAAGGATACGTGCAGGAGATAAACGCGCGCGAGAACGAGGAGAGGATCGAGGAGGAAGCGATTCTGGATCCCCTCAGCGAGGAGTACAAGCCCGGCTCGTGTTTGAGTTCAACCGCTGAGTACGCGGACTGGATGGACAAAGAGAGTTTCGAGGTCGCGGGTGAGGAGCAGAACAATGCCGACAATGGGGCGAGATTATCCGACGCGGAGGATCTTGATCGGCAGCCGAAGAAAAGAACGCTAACGACCCGTTTGGAGTGCGACCATTGTCGTCGCAGGTTCTTGAACAAGGGCAATCTCGCGGAGCACTTGAAGAAGCACAGGCACAAGTGCGCGGACTGCCCGAGGACGTTCAGGCTCCGTCGATACTTGGCCTCCCACGTCGACAAGATCCACCGGCGGCAGGTGTACGACTGCAGCGTGTGCGACTACAAGAGCAACAACAAGGGCACCCTGAAGAACCACTACATACGGCTGCACACCAACAGCTACAATTTCGCCTGCGACGTCTGCGGCAAGCAGTTCAAGATAAAGAAAGCCTTGAACCACCACGTGAAGCAGAACCACAGCGACGCGCCACCAATCGTCTGCGACGTATGCGGGCACTTCAGCAAGAACCTTCACGCGCTCAAGGCCCACATGAAGTACAGGCATTACAAGCCCGAGTTCATCTGCCGGATCTGTCGCAGAGGCATGACCACCAAGGAGAACCTGGAGCAACACCTCACGTGGCACGAGACCAGGGAGAAAGTGCTGTGCCCGACCTGCGGCAAGAGGTTCCGAGGTCGCGACCTCGATTCCCACATGAGAGTGCACACCGGGGTCAAGCCTTTCCCGTGCCCCGTCTGCGGAAAGTCGTTCAGGAGGCAGACAGCTCAGGAGCAACACGTTCTCATCCACACTGGCAAGAGACCGTATATCTGCGACATATGTGGGCAGGCGTTCGCCCAGAAACCGGGGCTGATTTGTCACAGGAAGCGTCATCCTGGACCACTTCCACCGCTACCTGTTGTGTCCATCAAGAACATCGTCACGGAGTTCACTAAGGAATATACTATGAAGAATGGGGTTATTAAGATTGAATGA
- Protein Sequence
- MKKWQILEFDGKPYYAFVPEGDTPLAEDDIPEHSGEIMNEEQKQGHVKEECLYNEDDLQYDSSDEKLYEEEHFLNGSMEQREDEDDEDVKPILLNGSLEDEADKAIGDLYQVKVQGSMVTIEKLMSRELNPKTEEYQQDTEEQMIYNEDDPLDQSDQGDQDQVEQVEYLEEALLESANNHVPPPKTRRKMSRNTGGALKCKVCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRPSNMLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPINCDVCGKLCQNSGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEINARENEERIEEEAILDPLSEEYKPGSCLSSTAEYADWMDKESFEVAGEEQNNADNGARLSDAEDLDRQPKKRTLTTRLECDHCRRRFLNKGNLAEHLKKHRHKCADCPRTFRLRRYLASHVDKIHRRQVYDCSVCDYKSNNKGTLKNHYIRLHTNSYNFACDVCGKQFKIKKALNHHVKQNHSDAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFICRICRRGMTTKENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYICDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKEYTMKNGVIKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01066410;
- 90% Identity
- iTF_00087367;
- 80% Identity
- -