Nmel005550.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- -
- Assembly
- GCA_964007305.1
- Location
- OZ023254.1:40422862-40426592[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00027 0.031 15.3 3.9 1 23 231 253 231 253 0.98 2 11 0.029 3.3 8.9 12.0 1 23 259 281 259 281 0.95 3 11 6.2e-05 0.0072 17.3 6.6 1 23 287 309 287 309 0.99 4 11 0.00043 0.05 14.7 1.6 1 23 315 337 315 337 0.95 5 11 1.3e-06 0.00015 22.6 1.9 1 23 343 365 343 365 0.97 6 11 2.8e-05 0.0032 18.4 1.1 1 23 371 393 371 393 0.97 7 11 8.1e-05 0.0095 16.9 1.6 1 23 398 420 398 420 0.97 8 11 4.5e-05 0.0052 17.8 0.0 1 23 426 448 426 448 0.96 9 11 4.2e-05 0.0049 17.8 0.2 2 23 460 481 459 481 0.96 10 11 5.5e-06 0.00064 20.6 2.5 3 23 549 569 547 569 0.96 11 11 4.6e-05 0.0053 17.7 4.6 1 23 579 601 579 601 0.96
Sequence Information
- Coding Sequence
- ATGTGCACGACGCCCGGTAATGCGGGCACGGGTTTCGGTTACGCGTGGTCGTTCAGCGGCCCGGGTAACGATGCCAGAGACAACGCGCAGGCCGAACTCGCGACGAACATAAATTATGCGGTAAACAACAATCAGGATCAAGGAACGTCGCAGAAAATACAGGTGGACATCAAACCGGCCAAGATCGCTATAAGCGCAACGCCGAGGAGACCGATGTTCGCGATGAACGAGACTTGTCAACAGACACCGACGACGACGCATCATGGACACACAGGATCTGCCGTGGCGCACAATCAAACACACGTGAGAATCAAGAAGCACCACGATGTATTTTCGCTCACGTGCGACAAGGGCGGTTGTAACTGCGACGCGGCGCATCCTACACCTCCGCCGCCGTCGTTGTTCTCCAACGCTCTTGTCTTCACGACCGCTGACAAACACGCAATGAGCAAACACTTCATGACGCCTCTGGGTCCTCTTCAGCTCACAGCTGAAGAATGCAACGAGATACTAATGAAGAGAGCTGCCGCGGCTTCCAATCAGACGACATCCAACAACGTGACGACGAGTCAGGCCGATGGTACGCATTTTGGACACGTTCTAACCCACGTCAACACGTCCCAGCTCGAGACCAAGGTTAAGCAGCAGCAGGACATGGGAAGTCAGGCACGGGTACCCAAGGAGAGACCTTACTCGTGCTCCGAGTGTGGCAAATCGTTTCTCCTCAAGCACCATTTGACGACGCATGCCAGGGTTCACACCGGGGAAAGACCCCACATATGCGTACACTGTGGCAAGACCTTTGCCCACAAACATTGTCTTCATACACATCTGTTGCTTCACAGCTCTGAACGACCCTATCAGTGCCGGGAGTGCAAGAAATCCTTCACCCTCAAACATCATCTGGTGACGCACACGCGGGTACATACACGCGAACGACCGTTCGTCTGTCAGGAGTGTGGCAGAGCTTTTCCCCTCAAGCGTCATCTGGTGACGCACAGTAAATTTCATTCGGGCGAGAGACCGTTCGTTTGCGAAGAGTGCGGAGAATCTTTCTCCCAGAAGGATCATCTTACGATGCACTCGCGCTTTCATGGGAGTTTGCATCCTTTTGTTTGTCACGATTGTGGCGCTACTTTTCAGAGAAAATTCGAGCTCGTCAATCATGGACGTCTTCATGGCAGAGTTCCCCATTCCTGTACAGTTTGCGGCAaggaatttttgcaaaagagaACCCTCCTGGCTCACATGCGTCTTCATACCGGTGAAACGCCGTTTGCCTGTACCGTCTGCGGCGAAGCTTTCCCGCGTAAAGTCGAGCTTGTTGCTCACTCCAAGATACACAATAACAACACGAATACCGATGAGAAATGTCTCACATGCAGggAATGTGGCTTGGACTTTTCGAACCGGGAAGCTCTTACGCTTCATCTTAGGTTACATTCTGGTGATCGCACCCTTGTTACCGACCTGTGTGGACTTGCCGCTGCATTTCAGCAAACACCGGGTCATTTTTTGACCCCAAATGCCACCGGAACACATCAgATGAACGGACCCCTCGGTACGCCTGGTGTTAGTCACATGCACGGGGCAACGCAGACATCACCTCCCGTGTGCTCGGGTCCAAAACCCAAACCCCATCTCTGTCCCGATTGCGGTCGTGGTTTTGCTCAGAAACACGGTCTCTCACAGCACCAGAGAAGACACACGGACGGCAGTTGTCACATAAGATCGCACATATGCGACAAATGCGGCAAAGCCTTTTTCCAAAAGAATCATCTTCTGCTGCATCAGCGTCAACATATGGACCCACCTCCAAGTATACTGCGACAACAGCAGAGACAGGCTGCGCAAGCCGCAGCCCAACAGGcccaacagcagcaacaacaacaagttcagcaacagcaacaacaagcGCAGGCTGCTACACAGCAGGCTCAGGCCCAGCAGGCCCAACAGCAGCAGGTTCTTCAGCAGACACAGCAACAACctcagcaacaacaacaagcacaacaacaacaaacgtGTACCGTCGACACGAAAGCCATACAGTTGCAGGCAATTCAGCAACAAGTAGCGCAACAGGTACAACAACAAgtgcaacaacaacaacaacaacagcaacaacaacagcaacaacaacaacagcaacagcaacaacaagcGTGCTCGGTGGACACAAAAGCAATACAGTTGAACGTCACCATGTGA
- Protein Sequence
- MCTTPGNAGTGFGYAWSFSGPGNDARDNAQAELATNINYAVNNNQDQGTSQKIQVDIKPAKIAISATPRRPMFAMNETCQQTPTTTHHGHTGSAVAHNQTHVRIKKHHDVFSLTCDKGGCNCDAAHPTPPPPSLFSNALVFTTADKHAMSKHFMTPLGPLQLTAEECNEILMKRAAAASNQTTSNNVTTSQADGTHFGHVLTHVNTSQLETKVKQQQDMGSQARVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHICVHCGKTFAHKHCLHTHLLLHSSERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRVPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKVELVAHSKIHNNNTNTDEKCLTCRECGLDFSNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNATGTHQMNGPLGTPGVSHMHGATQTSPPVCSGPKPKPHLCPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHICDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQQQQVQQQQQQAQAATQQAQAQQAQQQQVLQQTQQQPQQQQQAQQQQTCTVDTKAIQLQAIQQQVAQQVQQQVQQQQQQQQQQQQQQQQQQQQQACSVDTKAIQLNVTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01509061;
- 90% Identity
- iTF_01057831; iTF_00798754; iTF_00262839; iTF_00828968; iTF_00829714; iTF_00439678; iTF_00629283; iTF_01306692; iTF_01100790; iTF_01102245; iTF_01102999; iTF_00051208; iTF_01101528; iTF_01103736; iTF_01299479; iTF_01129535; iTF_00266656;
- 80% Identity
- -