Nlec003851.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neodiprion lecontei
Gene Symbol
-
Assembly
GCA_001263575.1
Location
NW:81132-90631[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00031 0.019 14.7 4.1 1 23 230 252 230 252 0.97
2 12 9.5e-06 0.0006 19.4 1.5 1 23 258 280 258 280 0.98
3 12 0.00072 0.045 13.5 3.8 1 23 286 309 286 309 0.95
4 12 0.0095 0.6 10.0 5.2 1 21 315 335 315 337 0.95
5 12 9.6e-05 0.006 16.3 1.9 1 23 343 365 343 365 0.99
6 12 1.1e-05 0.00072 19.2 0.4 1 23 371 393 371 393 0.98
7 12 0.00024 0.015 15.0 1.4 1 23 401 424 401 424 0.97
8 12 3.2e-05 0.002 17.8 2.7 2 23 431 452 430 452 0.97
9 12 9.5e-05 0.006 16.3 0.3 1 23 458 480 458 480 0.99
10 12 0.0022 0.14 12.0 7.1 1 19 486 504 486 509 0.91
11 12 0.26 16 5.5 0.3 1 11 523 533 523 533 0.93
12 12 0.027 1.7 8.6 0.2 9 23 548 562 546 562 0.91

Sequence Information

Coding Sequence
ATGTCCGGTAACGTAGCTGCGATTAAGTTGGAAGAGGGGCAAGAGTCTGTCACGGAGATACAGACGTACCTCGAGACATTCAACAAAGAAATTGAGGGAGGCCAGGGCGAACAGCTTCAGCATGTACAACTGCAACAAGTTGAGGGTCTCACCGGTGGGGACGACGGTGGCACCTACTTTGTCGATCAATCTGGCCAGTACTATTATCAAGCCAGTAGCGACGACCCACCAGTCATGACTCAAGTACAAATTCAAGAAGCAGACGATGGGGAAGGTCAGAACGACGGCGAAGATGGTCAGGATGAACAGTACCACGAAATAGAAGAGCTTGAGAATGTGCAGAGTGGAGAGAATGCGAGTAAACAGGGTACAGTATCCACGAATGGAAATAGCCAAGTGGTTATTAACTCTGGTGACGCGTATCAAACAGTGACAATTGTGCCGTCAGATACAAACCCAGGAGAAGTTAGCTACGTGTTAATCGTGCAGCAGCCTGAATCTGAGGAAAAAGATGGTCGAACGGAAGACGTGGAAGTGGGCGAAGGTGAGGAAGGGGAACAAGATTTAACTGTTTATGACTTCGAGGACAATGAGGACAACGACGCACCTGTTGAGTCCGAAGCTGAAGATgataagacaaaaataatcaaattcatCCCTAAGAAATCACAGACCGTGACACAGGCTCACATGTGTAACTACTGCAATTACACAAGTCCCAAGCGATATCTCTTATCTCGCCACATGAAATCTCACTCCGAGGAAAGACCACATAAATGTAGCGTTTGTGAAAGAGGCTTTAAGACTTTGGCTTCCCTGCAGAACCACGTTAACACACATACGGGAACAAAACCTCATCACTGCAAGTTCTGCGACAGCGCTTTCACTACGTCTgGTGAACTTGTAAGACATGTTCGGTACAGACATACCCATGAAAAGCCGCACAAATGTCATGAGTGTGATTACGCCTCGGTTGAGTTGTCCAAACTTAAACGACACATTAGGTGCCACACTGGAGAACGTCCCTATCAGTGTCCACATTGTACGTATGCAAGTCCAGACACCTTCAAGCTGAAACGTCATTTGCGCATTCATACGGGCGAAAAACCATACGAATGTGATATTTGCCAAGCAAGATTTACACAGTCCAACAGTTTGAAGGCTCACAAGCTAGTTCACAACgttgGAGATAAGCCCGTATTTCAATGTGAATTATGCCCAACAACGTGCGGAAGAAAAACTGACCTCAGAATTCACGTTCAAAAGTTACACACTTCTGATAAGCCGTTGAAATGCAAGAGATGTGGCAAGACATTCCCTGACAGGTATAGTTACAAACTTCACAATAAAACGCATGAAGGTGAGAAATGTTACAAGTGCGACCTCTGCCCGTACGCTTCAATATCAGCTCGTCACCTTGAGAGTCACATGCTCATTCATACGGATCAAAAACCATATCAGTGTGATCATTGCTATCAATCATTTAGGCAAAAACAATTGCTTAAACGCCACTGTAATCTATACCACAATCCTTCCTACGTACCACCACCACCTCAAGAGAAGACGCATCAATGTCCAGAGTGCGAAAGACCGTTCagCTGCAACCCGGTTATGGGTTGGAAAGTGTCTTGTTCTGGTGCTAAATACAGGCACAAAGGAAACCTCATACGACACATGGCTGTTCATGATCCTGAATCGTCCCTTCAAGAAAAACAACTGGCCCTTAAAATTGGACGTCAAAAGAAGATACAAATCATTGATGGCCAAAGGGTTGAAGTTATGACTGGTTACGAtgacgaagatgaagaagacgAGGATGAGATGATGGCCGTCGAAGGAAGCGACGGGCAGCAATATGTCGTCTTGGAAGTGATCCAGTTAGCAGATAATCAAGGAACTGATcagATGGCTGTTGTTGCTAGCGAAGATGGAGATTTGGTGATGCAAGATCCTTTGAGTCAGGACGAAGTAGTGGGTGGAACGGAAGAAGgtgaggaggaagaagaagaggaagtaGAAGAACATCAAGAAACCATCGAATTGAAACTAGAAGATAGTACCCATAATACCAGAAAATCAACACGATTGTCCGAATCATCGCAAAACGATCCAAAGCTACAAAAAGACATGGAAACCTGCTTCGGTTTTGACGAGgaagaggaagaggacgaggaagacgatAGCAATATTCATCTATTACAGACAATATCGTAA
Protein Sequence
MSGNVAAIKLEEGQESVTEIQTYLETFNKEIEGGQGEQLQHVQLQQVEGLTGGDDGGTYFVDQSGQYYYQASSDDPPVMTQVQIQEADDGEGQNDGEDGQDEQYHEIEELENVQSGENASKQGTVSTNGNSQVVINSGDAYQTVTIVPSDTNPGEVSYVLIVQQPESEEKDGRTEDVEVGEGEEGEQDLTVYDFEDNEDNDAPVESEAEDDKTKIIKFIPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCDSAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICQARFTQSNSLKAHKLVHNVGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHNKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCYQSFRQKQLLKRHCNLYHNPSYVPPPPQEKTHQCPECERPFSCNPVMGWKVSCSGAKYRHKGNLIRHMAVHDPESSLQEKQLALKIGRQKKIQIIDGQRVEVMTGYDDEDEEDEDEMMAVEGSDGQQYVVLEVIQLADNQGTDQMAVVASEDGDLVMQDPLSQDEVVGGTEEGEEEEEEEVEEHQETIELKLEDSTHNTRKSTRLSESSQNDPKLQKDMETCFGFDEEEEEDEEDDSNIHLLQTIS