Basic Information

Insect: Pseudomyrmex pallidus
Gene Symbol: -
Assembly: GCA_014825455.1
Location: QVNV01012303.1:19086-22544[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0004 0.039 14.7 4.1 1 23 237 259 237 259 0.97

2 11 1.2e-05 0.0012 19.4 1.5 1 23 265 287 265 287 0.98

3 11 0.00094 0.091 13.5 3.8 1 23 293 316 293 316 0.95

4 11 0.012 1.2 10.0 5.2 1 21 322 342 322 344 0.95

5 11 0.00012 0.012 16.3 1.9 1 23 350 372 350 372 0.99

6 11 7.1e-05 0.0069 17.1 0.8 1 23 378 400 378 400 0.98

7 11 0.00064 0.063 14.0 0.8 1 23 408 431 408 431 0.97

8 11 3.4e-05 0.0033 18.1 2.6 2 23 438 459 437 459 0.97

9 11 0.00012 0.012 16.3 0.3 1 23 465 487 465 487 0.99

10 11 0.0033 0.32 11.8 7.3 1 19 493 511 493 516 0.91

11 11 1.3e-07 1.3e-05 25.6 1.7 1 23 530 552 530 552 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0004	0.039	14.7	4.1	1	23	237	259	237	259	0.97
2	11	1.2e-05	0.0012	19.4	1.5	1	23	265	287	265	287	0.98
3	11	0.00094	0.091	13.5	3.8	1	23	293	316	293	316	0.95
4	11	0.012	1.2	10.0	5.2	1	21	322	342	322	344	0.95
5	11	0.00012	0.012	16.3	1.9	1	23	350	372	350	372	0.99
6	11	7.1e-05	0.0069	17.1	0.8	1	23	378	400	378	400	0.98
7	11	0.00064	0.063	14.0	0.8	1	23	408	431	408	431	0.97
8	11	3.4e-05	0.0033	18.1	2.6	2	23	438	459	437	459	0.97
9	11	0.00012	0.012	16.3	0.3	1	23	465	487	465	487	0.99
10	11	0.0033	0.32	11.8	7.3	1	19	493	511	493	516	0.91
11	11	1.3e-07	1.3e-05	25.6	1.7	1	23	530	552	530	552	0.98

Sequence Information

Coding Sequence: ATGACCAGTAACGTAACAACTATAAAATTGGAAGATGGACAAGAATCTGTTACAGAGATACAAACGTATCTCGAAACGTTTAATAAAGAAATAGAAGGAGGACAAGGAGAACAACTGCAGCATGTGCAGTTACAACAAGTAGAGGGATTATCTAGTGAGGATGGTGGGACATATTTTGTTGATCAGTCAGGTCAATATTACTATCAAGCAAATAGTAATGAGGCACCTGTGATGACACAAGTGCAAATCCAAGAAGTCGAAGAGACTGATGTACAAAATGAAGGAGAGGCTACTCAGGAAGAACAGTATCAAGAGATTGAAGAGCTTGAAACTGCTGAGAGTGAAGAAAATGGACAAATAGCCAATAATGAGAATAATCAAGTTGTGATTAATTCTGGTGATGCATATCAAACTGTTACAATTGTGCCGTCTGACACAAATCCTGGAGAAGTGAGCTACGTTTTGATAGTTCAACAACCTGACTCTGAGGAGAAAGAAACTAAACCAACCGAAGGTGAAACGTCGGTGACCGCAGCAGCGACTGCAACAGGAGCGGAAGGAGAAGAGGCTGAAGGAGAACAAGATCTTACTGTGTACGACTTTGAAGATAACGAGGACAATGAACCCGCGGTGGAATCTGAAACGGAAGATGATAAAACTAAAATTATCAAACTCATCCCAAAGAAATCTCAAACTGTTACACAGGCCCATATGTGCAACTACTGTAACTACACAAGTCCGAAACGGTATCTTTTGTCACGACATATGAAATCCCACTCTGAGGAAAGACCACATAAATGTAGTGTTTGTGAAAGAGGATTCAAAACTCTGGCTTCGCTTCAGAATCACGTTAACACTCATACGGGGACCAAGCCTCACCATTGCAAATTTTGCGATAGTGCATTCACAACTTCTGGTGAATTAGTGAGACATGTTAGATACAGACATACTCATGAAAAACCGCATAAATGTCACGAGTGCGATTACGCATCTGTTGAACTGTCGAAATTAAAGAGACATATTAGATGTCACACAGGCGAACGTCCTTATCAGTGTCCACACTGTACATACGCAAGTCCGGATACATTTAAACTGAAACGTCATCTTCGCATTCATACTGGTGAAAAGCCGTACGAATGCGATTTTTGTCAAGCAAGGTTTACTCAATCCAATAGTTTGAAAGCTCACAAATTAATACATAATGTAGGCGATAAACCGGTATTTCAGTGTGAACTGTGTCCAGCTACATGTGGCAGGAAGACGGATCTCAGAATTCATGTGCAAAAGTTACATACTTCTGATAAGCCGCTAAAGTGCAAACGTTGTGGAAAAACATTCCCAGATAGATATAGTTATAAGTTGCATAGTAAAACTCACGAAGGGGAGAAGTGTTACAAGTGCGATCTGTGTCCATACGCGTCTATATCGGCGCGTCACTTGGAGAGCCACATGCTCATCCACACCGATCAGAAACCGTATCAATGTGATCACTGCTTTCAATCATTCAGACAGAAACAGTTACTCAAACGGCATTGCAATCTTTATCACAATCCTACTTACGTGCCTCCACCGCCGCAAGAAAAAACACATCAGTGTCCTGAATGCGAAAGGGCATTTAGACATAAAGGAAATCTTATGCGACATATGGCTGTTCATGATCCGGAATCTTCTCTGCAAGAAAAACAACAAGCGCTCAAAATCGGCAGACAGAAAAAGATCCAATTTATCGACGGACAACGAGTGGAAGTAATGACAGGTGATTTAGCTTCTAAACTTAAAGGTTATGAAGATGAGGAAGAGGAAGAAGACGAAGAAGACATTATGGCTGTACAAGGTAGCGATGGTCAGCAGTATGTCGTGCTAGAAGTAATTCAGTTAGCTGACAATCAAGGAACTGAACAGATGGCAGTGGTCGCCAATGAAGATGGAGAATTGATGATGCAGGATCCCTTAGGACAAGAGAATGGTATAGTAACTGGCACAACGGACGAAGTTGACGAAGTGGAAGAAGAGATAGAAATGCAAGAGTTAAAGGTGGAAAATATTACTTCATCTAAATCTCCAGCACAGAGCATACCAAGCGATTCTAAGTTGCAAAAAGAAATGGAAACGTGCTTCGGTTTCGACGAAGAAGAAGAAGAAGAAGATGGAGAAACGGATAATAACATAAATATGTTACAGACCATTTCGTAA
Protein Sequence: MTSNVTTIKLEDGQESVTEIQTYLETFNKEIEGGQGEQLQHVQLQQVEGLSSEDGGTYFVDQSGQYYYQANSNEAPVMTQVQIQEVEETDVQNEGEATQEEQYQEIEELETAESEENGQIANNENNQVVINSGDAYQTVTIVPSDTNPGEVSYVLIVQQPDSEEKETKPTEGETSVTAAATATGAEGEEAEGEQDLTVYDFEDNEDNEPAVESETEDDKTKIIKLIPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCDSAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDFCQARFTQSNSLKAHKLIHNVGDKPVFQCELCPATCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPTYVPPPPQEKTHQCPECERAFRHKGNLMRHMAVHDPESSLQEKQQALKIGRQKKIQFIDGQRVEVMTGDLASKLKGYEDEEEEEDEEDIMAVQGSDGQQYVVLEVIQLADNQGTEQMAVVANEDGELMMQDPLGQENGIVTGTTDEVDEVEEEIEMQELKVENITSSKSPAQSIPSDSKLQKEMETCFGFDEEEEEEDGETDNNINMLQTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01048414;
90% Identity: iTF_01269242;
80% Identity: -