Scul011144.1
Basic Information
- Insect
- Stenichneumon culpator
- Gene Symbol
- -
- Assembly
- GCA_964017025.1
- Location
- OZ024773.1:10808158-10811269[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00045 0.043 14.7 4.1 1 23 226 248 226 248 0.97 2 11 1.4e-05 0.0013 19.5 1.5 1 23 254 276 254 276 0.98 3 11 0.0036 0.34 11.9 3.8 1 23 282 305 282 305 0.95 4 11 0.014 1.3 10.0 5.2 1 21 311 331 311 333 0.95 5 11 0.00014 0.013 16.3 1.9 1 23 339 361 339 361 0.99 6 11 9e-06 0.00087 20.1 0.3 1 23 367 389 367 389 0.98 7 11 0.00035 0.034 15.0 1.4 1 23 397 420 397 420 0.97 8 11 3.8e-05 0.0036 18.1 2.6 2 23 427 448 426 448 0.97 9 11 0.00014 0.013 16.3 0.3 1 23 454 476 454 476 0.99 10 11 0.0031 0.3 12.1 7.1 1 19 482 500 482 505 0.91 11 11 1.2e-07 1.2e-05 25.9 1.3 1 23 519 541 519 541 0.98
Sequence Information
- Coding Sequence
- ATGTCGGCTAACGTAGCGACTATAAAGCTAGAAGAAGGTCAGGAATCTGTAACGGAGATACAGACCTACCTAGAGACCTTCAATAAAGAAATCGAGGGCGGTCAGGGAGAGCAGTTACAACATGTACAACTGCAGCAAGTGGAGGGCCTCTCAGGAGGGGAGGAGGGCGGAACTTACTTTGTAGATCAAGCTGGCCAGTATTACTACCAGGCGAGCGGGGAGGACGCTCCTGTTATGACTCAGGTTCAGATTCAGGAGGTCGACGATACGGATGCCCAGACCGAAGGCGAAGTCGTCTCGGAGGACCAGTATCATGAAATCGAGGAGCTGGAGAATGTGGAGGGAGACGATGAAGGTCACGGTTCCGAGAACAACCAGGTGGTTCTCAATTCCGGAGACGCTTATCAGACGGTGACGATAGTGCCGTCGGACACGAATCCCGGCGAGGTCAGTTACGTACTCATAGTTCAGCAGCCGGACGCCGAGGAGAAGGAGGCTCGGGCGATGGACGGGGACGTCggcgacggcgaggacggcgagggcGATCAGGATCTGACGGTGTACGACTTCGAGGACAACGAGGACAACGACGGCGCCACCGAGTACGAGGCGGAGGACGACAAGACGAAAATCGTCAAGTTCCTGCCGAAAAAGTCTCAGACCGTAGCGCAAGCTCACATGTGCAATTATTGCAACTACACGAGTCCAAAGAGATACCTACTGTCCCGTCACATGAAGTCCCACTCGGAGGAAAGACCGCACAAGTGCAGCGTCTGCGAGAGGGGTTTCAAGACACTGGCCTCGTTGCAGAATCACGTAAACACACACACGGGGACCAAGCCGCATCATTGCAAATTTTGCGAGAGCGCATTCACGACCTCCGGCGAGCTCGTGAGGCACGTACGGTACAGACATACCCACGAAAAACCGCACAAATGTCACGAGTGCGATTACGCGTCGGTAGAGTTGTCGAAACTCAAACGGCACATAAGATGCCACACGGGCGAGCGTCCCTATCAGTGTCCTCATTGTACCTACGCCAGTCCGGATACCTTCAAGCTCAAGCGCCACTTGCGTATCCATACCGGGGAAAAGCCGTACGAGTGTGATATATGCAACGCCCGATTTACCCAATCCAACAGTCTGAAGGCCCACAAGCTTGTTCACAACGTCGGAGACAAGCCGGTGTTTCAGTGCGAGCTCTGTCCGACGACGTGCGGCAGGAAGACGGACCTCCGGATTCACGTCCAGAAGCTTCATACCTCCGACAAACCTCTCAAGTGCAAGCGGTGTGGCAAGACATTCCCTGACAGGTATAGTTACAAGCTTCACAGCAAGAcacacgagggcgaaaaatgCTACAAGTGCGATCTCTGTCCATACGCGTCAATATCTGCCCGTCACCTTGAGAGTCATATGCTCATACACACGGACCAAAAACCATACCAGTGCGACCACTGTTATCAGTCTTTCAGACAGAAGCAGTTACTAAAACGCCACTGCAATCTGTACCACAATCCGACGTACGTTCCGCCACCGCCACAGGAGAAGACTCACCAATGTCCCGAGTGCGAGAGGGCTTTCAGGCACAAAGGCAACCTCATTCGGCATATGGCCGTACACGATCCGGAATCGTCGCTTCAGGAAAAGCAGCAAGCCCTAAAGATCGGTCGACAGAAGAAGATCCAAATTATCGACGGTCAGAGAGTCGAGGTCATGACGGGTGAATTAGCTTCTAAACTTAAAGGttacgacgacgaggaggaggaagacgaGGACGATATGATGGCCGTGGAGGGAAGCGATGGCCAGCAGTACGTCGTTCTGGAGGTCATCCAACTTGCCGATAATCAGGGAAGCGAACAGATGGCTGTCGTTGCGAACGAAGACGGTGACTTGATGATGCAAGATCCCCTCGGCCAAGACAGCGGGATTGTCACTGAAGTCGGTGAGAACGGCGAAGAGGATGAAATCGTAATGGGCGAGTTGAAGGTCGAAGATGGTATTCAGTCGGCGCCGAAGTCGTCGGGTCAAACTTCGCGGGCCGATCCCGGCCTGCGCAAGGAGATGGAAACATGCTTCGGCTTTGACGAGgatgaggaggaggacgaggaagacgGCAGTGAAATGCGCTTACTGCAAACAATTTCGTAA
- Protein Sequence
- MSANVATIKLEEGQESVTEIQTYLETFNKEIEGGQGEQLQHVQLQQVEGLSGGEEGGTYFVDQAGQYYYQASGEDAPVMTQVQIQEVDDTDAQTEGEVVSEDQYHEIEELENVEGDDEGHGSENNQVVLNSGDAYQTVTIVPSDTNPGEVSYVLIVQQPDAEEKEARAMDGDVGDGEDGEGDQDLTVYDFEDNEDNDGATEYEAEDDKTKIVKFLPKKSQTVAQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCESAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICNARFTQSNSLKAHKLVHNVGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCYQSFRQKQLLKRHCNLYHNPTYVPPPPQEKTHQCPECERAFRHKGNLIRHMAVHDPESSLQEKQQALKIGRQKKIQIIDGQRVEVMTGELASKLKGYDDEEEEDEDDMMAVEGSDGQQYVVLEVIQLADNQGSEQMAVVANEDGDLMMQDPLGQDSGIVTEVGENGEEDEIVMGELKVEDGIQSAPKSSGQTSRADPGLRKEMETCFGFDEDEEEDEEDGSEMRLLQTIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01048414;
- 90% Identity
- iTF_00414529;
- 80% Identity
- -