Basic Information

Insect: Trypoxylon attenuatum
Gene Symbol: -
Assembly: GCA_963989405.1
Location: OZ022489.1:13574665-13577892[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00037 0.034 14.7 4.1 1 23 229 251 229 251 0.97

2 11 1.1e-05 0.0011 19.5 1.5 1 23 257 279 257 279 0.98

3 11 0.00085 0.08 13.6 3.8 1 23 285 308 285 308 0.95

4 11 0.011 1.1 10.0 5.2 1 21 314 334 314 336 0.95

5 11 0.00011 0.011 16.3 1.9 1 23 342 364 342 364 0.99

6 11 2.7e-05 0.0026 18.3 0.2 1 23 370 392 370 392 0.98

7 11 0.00059 0.055 14.1 0.8 1 23 400 423 400 423 0.97

8 11 2.5e-05 0.0024 18.4 2.5 2 23 430 451 429 451 0.97

9 11 0.00011 0.011 16.3 0.3 1 23 457 479 457 479 0.99

10 11 0.003 0.28 11.8 7.3 1 19 485 503 485 508 0.91

11 11 1.3e-07 1.2e-05 25.6 1.2 1 23 522 544 522 544 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00037	0.034	14.7	4.1	1	23	229	251	229	251	0.97
2	11	1.1e-05	0.0011	19.5	1.5	1	23	257	279	257	279	0.98
3	11	0.00085	0.08	13.6	3.8	1	23	285	308	285	308	0.95
4	11	0.011	1.1	10.0	5.2	1	21	314	334	314	336	0.95
5	11	0.00011	0.011	16.3	1.9	1	23	342	364	342	364	0.99
6	11	2.7e-05	0.0026	18.3	0.2	1	23	370	392	370	392	0.98
7	11	0.00059	0.055	14.1	0.8	1	23	400	423	400	423	0.97
8	11	2.5e-05	0.0024	18.4	2.5	2	23	430	451	429	451	0.97
9	11	0.00011	0.011	16.3	0.3	1	23	457	479	457	479	0.99
10	11	0.003	0.28	11.8	7.3	1	19	485	503	485	508	0.91
11	11	1.3e-07	1.2e-05	25.6	1.2	1	23	522	544	522	544	0.98

Sequence Information

Coding Sequence: ATGACGAGTAACGTGGCAACGATAAAGCTGGAAGAAGGACAAGAGTCTGTCACAGAGATACAAACTTATTTAGAAACATTTAACAAGGAAATCGAAGGAGGTCAAGGGGAACAATTACAACATGTGCAGTTGCAACAAGTGGAAGGACTGTCCGGTGGCGAAGAAGGTGGAACTTACTTTGTTGACCAATCAGGGCAATATTATTATCAAGCCAACAGTGACGAAACACCTGTGATGACACAAGTGCAAATCCAAGAGATCGAGGAAACGGATGTACAGAACGAGGCTGAAGGAAATCAGGAGGATCAGTATCAAGAAATCGAAGAACTCGAACAAGTTGAGGCTGAAGAAGAAGGACAAGCGACGGCGAATGGAGGAAATAATCAAGTAGTGATCAATTCTGGCGACGCATATCAAACTGTCACAATTGTACCATCGGACGCCAATCCTGGCGAAGTCAGTTATGTGTTAATAGTGCAACAACCAGAATCGGAAGAAAAGGATGGCAGAGGAGGAGAGCGGGAAGGAGGCGATGGGGATGAAGGAGAAGGCGAACAGGATCTCACAGTGTACGATTTTGAAGACAACGAGGATAACGAAGCCCCTGCTGAGTCGGAAGCCGAAGATGACAAAACGAAGATCATCAAGTTCCTTCCTAAAAAATCTCAGACAGTCACCCAAGCTCATATGTGTAATTACTGTAATTACACAAGTCCAAAGCGATATTTGTTATCGCGTCATATGAAATCACATTCAGAGGAGAGGCCACATAAGTGTAGCGTCTGTGAGAGAGGATTCAAAACTTTAGCGTCTCTTCAGAATCATGTTAATACACACACAGGGACCAAGCCCCACCATTGTAAATTTTGTGACAGTGCATTCACCACATCAGGTGAACTTGTGAGGCATGTTCGGTACAGACATACTCATGAAAAACCACACAAGTGTCACGAGTGCGATTACGCGTCAGTCGAACTCTCGAAACTTAAACGGCATATTAGATGTCATACTGGAGAGCGTCCTTATCAGtgtCCTCATTGTACATACGCAAGTCCAGATACGTTCAAATTAAAACGACATTTGCGTATCCATACCGGAGAGAAGCCGTACGAGTGTGATTTATGTCCGGCTAGGTTTACCCAATCCAACAGTCTTAAAGCTCATAAATTGATACATAATGTAGGTGATAAACCCGTTTTCCAATGTGAACTGTGTCCAGCTACATGCGGCAGAAAGACCGATCTCAGAATACACGTACAAAAGCTACATACCTCCGACAAGCCCTTGAAATGCAAGCGGTGTGGCAAGTCATTCCCGGATagATATAGTTATAAGCTGCACAGCAAGACTCACGAGGGAGAGAAATGTTACAAATGCGATCTTTGCCCGTATGCTTCAATATCTGCGCGCCATTTGGAAAGTCATATGCTCATTCATACGGATCAGAAACCATACCAATGCGATCACTGTTTCCAGTCGTTTCGGCAAAAACAATTGCTCAAGCGGCATTGTAATCTATATCATAATCCATCGTACGTTCCACCACCACCTCAGGAGAAGACACATCAATGTCCGGAATGTGAAAGGCCTTTCAGGCACAAAGGTAACCTGATTCGTCATATGGCCGTCCATGATCCGGAATCATCCTTACAAGAAAAGCAGCAAGCTCTGAAAATGGGAAGgcaaaaaaaaatccaaatcATCGATGGCCAAAGAGTCGAAGTTATGACAGGTGACTTAGCTTCTAAACTTAAAGGTTACGGTGAcgacgatgaagaagaagacgaggaagatATGATGGCGGTGGAAGGAAGCGATGGACAGCAGTACGTTGTGTTGGAAGTCATTCAGTTAGCCGACAATCAAGAAAACGATCAGCAAATGGCTGTGGTTGCGAGCGAAGACGGTGATTTGGTGATGCAAGATCCACTCGGTCAAGACAACATGGTTACCGGTAGCGAACAGGGGGATGAAGTCGAGGTCGAAGAAGCGGATATGACAGCCTTGAAAATCGAACCTGGTACAGAAAAGTCTTCGGCACACAGCGATCCAAAGCTACAGAAAGAAATGGAAACCTGTTTCGGGTTTGACGAAgaagaagaagaggaagaagacgatgGCAGTAGTAACATAAATATACTGCAAACAATTTCGTAA
Protein Sequence: MTSNVATIKLEEGQESVTEIQTYLETFNKEIEGGQGEQLQHVQLQQVEGLSGGEEGGTYFVDQSGQYYYQANSDETPVMTQVQIQEIEETDVQNEAEGNQEDQYQEIEELEQVEAEEEGQATANGGNNQVVINSGDAYQTVTIVPSDANPGEVSYVLIVQQPESEEKDGRGGEREGGDGDEGEGEQDLTVYDFEDNEDNEAPAESEAEDDKTKIIKFLPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCDSAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDLCPARFTQSNSLKAHKLIHNVGDKPVFQCELCPATCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPSYVPPPPQEKTHQCPECERPFRHKGNLIRHMAVHDPESSLQEKQQALKMGRQKKIQIIDGQRVEVMTGDLASKLKGYGDDDEEEDEEDMMAVEGSDGQQYVVLEVIQLADNQENDQQMAVVASEDGDLVMQDPLGQDNMVTGSEQGDEVEVEEADMTALKIEPGTEKSSAHSDPKLQKEMETCFGFDEEEEEEEDDGSSNINILQTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01048414;
90% Identity: iTF_01421078;
80% Identity: -