Basic Information

Insect: Neocrepidodera transversa
Gene Symbol: -
Assembly: GCA_963243735.1
Location: OY725355.1:479181-496189[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.3e-05 0.0056 18.5 0.7 1 23 165 187 165 187 0.95

2 15 0.0015 0.25 13.3 1.2 3 23 195 215 194 215 0.99

3 15 0.00012 0.02 16.8 0.3 1 23 325 347 325 347 0.98

4 15 0.021 3.5 9.7 0.3 1 23 354 377 354 377 0.95

5 15 7.8e-07 0.00013 23.6 3.6 1 23 401 423 401 423 0.98

6 15 0.0079 1.3 11.0 0.0 1 23 436 458 436 458 0.95

7 15 0.28 48 6.1 0.0 1 23 464 487 464 487 0.93

8 15 0.21 35 6.6 1.4 2 19 495 512 495 513 0.95

9 15 2.1e-05 0.0035 19.2 4.2 1 23 522 544 522 544 0.97

10 15 0.0041 0.7 11.9 0.3 2 23 550 571 549 571 0.96

11 15 1.1e-05 0.0018 20.1 0.4 1 23 579 601 579 601 0.98

12 15 0.0046 0.78 11.8 0.2 3 23 609 629 607 629 0.97

13 15 0.00015 0.025 16.5 0.3 1 23 635 657 635 658 0.95

14 15 0.087 15 7.8 1.8 1 23 672 694 672 694 0.96

15 15 0.0005 0.085 14.8 0.1 1 20 1059 1078 1059 1081 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.3e-05	0.0056	18.5	0.7	1	23	165	187	165	187	0.95
2	15	0.0015	0.25	13.3	1.2	3	23	195	215	194	215	0.99
3	15	0.00012	0.02	16.8	0.3	1	23	325	347	325	347	0.98
4	15	0.021	3.5	9.7	0.3	1	23	354	377	354	377	0.95
5	15	7.8e-07	0.00013	23.6	3.6	1	23	401	423	401	423	0.98
6	15	0.0079	1.3	11.0	0.0	1	23	436	458	436	458	0.95
7	15	0.28	48	6.1	0.0	1	23	464	487	464	487	0.93
8	15	0.21	35	6.6	1.4	2	19	495	512	495	513	0.95
9	15	2.1e-05	0.0035	19.2	4.2	1	23	522	544	522	544	0.97
10	15	0.0041	0.7	11.9	0.3	2	23	550	571	549	571	0.96
11	15	1.1e-05	0.0018	20.1	0.4	1	23	579	601	579	601	0.98
12	15	0.0046	0.78	11.8	0.2	3	23	609	629	607	629	0.97
13	15	0.00015	0.025	16.5	0.3	1	23	635	657	635	658	0.95
14	15	0.087	15	7.8	1.8	1	23	672	694	672	694	0.96
15	15	0.0005	0.085	14.8	0.1	1	20	1059	1078	1059	1081	0.94

Sequence Information

Coding Sequence: ATGGAGGAATCTTTCGGTTTAACGTGGGAGGATTCAAACACAGTCGTTCAAACCGAAGAGGTAATTTGTGGCATAGAAAATGAAATCCTTCCATCGGAAAGCGACGAATTCGTCCAAGAAGAAACTGTCGCCGAAGAAATAATAGAATCCGAGAATAAAATTCATGATGAAGTCGTCGAATTACAGGAAGATGTTAATGTTCCTGATATACAAGAAACTCAGgagGTACAAGAAAATGTAGGCATGGATCGCATAATGTACCTATCAGATGGTAACGTTCTTGTTGTTAATCAACAAACTTCGGAAGCACCTTTTCAAGAAGTGGAAGAATGCCAAGTTTCTGAAGAGATTATTACAGGTGGTTGGGGAGATAATTGTGCTGAAGAAATCGTTGTTGGATCAGAAGAAGCGATTGGTACTGAAGAAACTAATCAGGAAGATTTTGATATACCGTTACCGACTGATCAAGATGAATATACCGCAGCTAGACCTTATCCATGCGATTTTTGTAGTCGTAGATTTAGAAAAAAGGCGAATCTCATGAACCATATGGTTGCACATCAAACGGATAGACCTCATGGGTGTAATTTATGCGGTGTGCGGTATATAAGAAAATGTGATCTAATGAACCATCTAAAGATTCATGCTTATATACCAGAAGCAGACGGTCTAGAAGATGACGAGATCCAAAATTTGGACGATCTCGGCGACGGTTcggacaaaaagaaaaaatcaaaacagatcaataagaagagaaaaaagaaaatcaaagaagAATTTGATACGTACGAAGAAGATTTAGGCGCTTCGAGTTCTCGAACCTATAATTATGTAGACGAAGATATGAAATTGATGGAACAAATGTCGAACAACGTCAAGCACGATTACAACTACATCcaagaagaagaagaggaagaagaaGAACAACAGCCTGCGGAAACTAGGTATCCCGTTACTGATCCTAGAAAGCCGTTCGTTTGTCAACATTGTGGAGTAGGATTCGCTAGGGAAAAGGCCATGTTGTCTCATATTAGGATGCATTCGGAAGGTGACAGTCCATTCGAATGTCAAAAATGTGGGGAAATGTTTTGGGATTTGATGCAAATGAAGGAACACATAAAAGAGAAACACGGAGAAATTGATGATtacgatgatgatgatgatgaggATTATTCCGAAGAAGATACAAAATATGGAACTTATTATTGTTCAACTTGCGGACTTTCCTTTCACAGACAAGACAATCTTAGAAGACACCAAAGGATTCACGTTAAAGAAGAATTCGtaaacgaacacgaattcggACACGTTTGTAACGTTTGCGGAGAGTCATTTCAAGAAGCGCTGGATTTATTGGCTCACGCTGAAGTCCATGCTAGGACTCTTGAATACAGATGTATGATATGCGGAGAAATCGCTGAAGATGAAAATTTATTAGCGGTACATGTACAgGctaaacatggaaaaaatctaCCTCCAAATACTTGTATGCTTTGCGGACGAGGTTGTAAAGATCGTCGAACGCTTTTGAAACATTCATGGGAACATTCTAAAGAAAAGgttttcgcTTGTACGAAATGCGACAAAACTTTCCACAACAAAGCCAGACTGAAACGTCACATGCTATCCCACAGGAACAAAGTCGTAAGTTGCGATGTGTGCGGAGAGGAATTCCCTGACGGTAGATCACTGATGAATCACAGACACAGCCACAGCAGCGTTTCCGGCAGGCAATTTCCCTGCAGGGAATGCGGAAAAACCTTCGGATCTAGAAGTTCACAACAAATACATATTAGGATACATACAGgtgAGAGGCCCTACGGGTGTAGATTTTGTTGGAAAGCGTTTGCTGATGGTGGGACTTTAAGAAAACACGAAAGAAtccatactggtgaaaaaccaTACGCTTGTGCTGTATGTCCAAGGGCGTTTAATCAAAGAGTCGTATTAAGGGAACACATTAGGTCACATCATTCCGGACCTGATCCTAAATATTCAAACAGtatgaCACCGTATTGTTGTTCGGTATGTTCGGACATGTTCGCAACTTCTCAGGATCTAATTTTACATCTGATCCACCATTGCGACATGAATACAGCGATGAAACGACAACCACAAGTCGGTCCCAGGAAATACAAACGACGAAGAAAACTCAAACCGCATGAACTAGAAATGATTACTAATAGGATGGATGATGGAGACAATGAGCAATCGGAGgaTTTGGGAGACAATTATACGGATTCGGAGGAAGAAAAAGAGAGGAAGAAACGGTACAGCAGGAAGCAGCCTACAAAGAAGGTTTCTTCGCCGGAATCTCCAAAAGAATCTGTTTCGGAATCATATGCTGAGTTGTATAACAGTGTTTCTTCAACAATAGAAAACATCAACTCGCTCGTAAACTCAAAATCGACGCCGAAATCAGCGAAAcaacaaacgaaaaaattgaaatccgATCAATCGGTGCCGAGCAGACCAAAAATGATCCACACGCAAAAAACTCGAGTTCCGGTGGAAGCGGGCGAAGACGGCCGAGTGAGGCACAAAACGAAAACGCTGATCACTAGAACGCAACCGACAGAATTGAAATCGGCTACCGGTGAACGGATACGTCCTAGAACAAAAAACGTCAACTATCACGTCCTGCAAGAAAAACTCCCCCTGGCAACATTCGAAGACGTCGCAGGTGACAAAGACACTCAAGAAGCCGTCGATAATTTATTGAAACAAGAAAACGTCATCGTAGAACAAGAACACCAATCTTTAGaccaacaacaacaacaacagcaACAACACAATAACGGCGTTATCTACATGGACCAATTCGAACAACCGCCGGAAGTTGCTTCAGAACAAACCGTGGAAAGCGAAGATCCTGTACCTATCACTTTGATGGATGTTAGGAGGACTACGAGGTCGAGAACTAGTAGTAGTAGTAATAGTTTGAAGCCCGGGAGGCATATCATTGGACCGGGGAGTAaaGTAAGACTGGTAAAAGAAGGCATGATAGTATCGAAAAAATCTAGAAACAAAAAATCCGAATCCGAAAACGAGTTGCCCATCAACGATCTGTTGCCCCATCACAATCCGATCAAGCAAGAAATCGTCGATCCATCGCCGTTACATGAACTAGCCGAAATTTCGATGCAACACGCCAACGCCAACGCGCAGAATCTCTTCAAATGCGAAATGTGCAGCGAAGTGTTCTCCGATAGGGCGCAATTACTCGTTCACGTACCCATACATATTTGA
Protein Sequence: MEESFGLTWEDSNTVVQTEEVICGIENEILPSESDEFVQEETVAEEIIESENKIHDEVVELQEDVNVPDIQETQEVQENVGMDRIMYLSDGNVLVVNQQTSEAPFQEVEECQVSEEIITGGWGDNCAEEIVVGSEEAIGTEETNQEDFDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYIPEADGLEDDEIQNLDDLGDGSDKKKKSKQINKKRKKKIKEEFDTYEEDLGASSSRTYNYVDEDMKLMEQMSNNVKHDYNYIQEEEEEEEEQQPAETRYPVTDPRKPFVCQHCGVGFAREKAMLSHIRMHSEGDSPFECQKCGEMFWDLMQMKEHIKEKHGEIDDYDDDDDEDYSEEDTKYGTYYCSTCGLSFHRQDNLRRHQRIHVKEEFVNEHEFGHVCNVCGESFQEALDLLAHAEVHARTLEYRCMICGEIAEDENLLAVHVQAKHGKNLPPNTCMLCGRGCKDRRTLLKHSWEHSKEKVFACTKCDKTFHNKARLKRHMLSHRNKVVSCDVCGEEFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSNSMTPYCCSVCSDMFATSQDLILHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELEMITNRMDDGDNEQSEDLGDNYTDSEEEKERKKRYSRKQPTKKVSSPESPKESVSESYAELYNSVSSTIENINSLVNSKSTPKSAKQQTKKLKSDQSVPSRPKMIHTQKTRVPVEAGEDGRVRHKTKTLITRTQPTELKSATGERIRPRTKNVNYHVLQEKLPLATFEDVAGDKDTQEAVDNLLKQENVIVEQEHQSLDQQQQQQQQHNNGVIYMDQFEQPPEVASEQTVESEDPVPITLMDVRRTTRSRTSSSSNSLKPGRHIIGPGSKVRLVKEGMIVSKKSRNKKSESENELPINDLLPHHNPIKQEIVDPSPLHELAEISMQHANANAQNLFKCEMCSEVFSDRAQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00459177; iTF_00057007; iTF_01106616; iTF_00911322; iTF_00736049;
90% Identity: -
80% Identity: -