Basic Information

Insect: Ophraella communa
Gene Symbol: -
Assembly: GCA_035357415.1
Location: CM068985.1:41829796-41847591[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3e-05 0.011 18.5 0.7 1 23 163 185 163 185 0.95

2 15 0.0013 0.48 13.3 1.2 3 23 193 213 192 213 0.99

3 15 0.00011 0.041 16.7 0.5 1 23 322 344 322 344 0.98

4 15 0.34 1.2e+02 5.7 0.3 1 23 351 374 351 374 0.81

5 15 1e-06 0.00037 23.1 3.8 1 23 398 420 398 420 0.98

6 15 0.0043 1.5 11.7 0.1 1 23 433 455 433 455 0.95

7 15 4.2 1.5e+03 2.3 0.1 1 23 461 484 461 484 0.80

8 15 0.057 21 8.2 1.9 2 19 492 509 492 510 0.96

9 15 2e-05 0.0071 19.1 4.0 1 23 519 541 519 541 0.97

10 15 0.0027 0.99 12.4 0.3 2 23 547 568 546 568 0.97

11 15 9.5e-06 0.0035 20.1 0.4 1 23 576 598 576 598 0.98

12 15 0.0041 1.5 11.8 0.2 3 23 606 626 604 626 0.97

13 15 0.00013 0.048 16.5 0.3 1 23 632 654 632 655 0.95

14 15 0.078 28 7.8 1.8 1 23 669 691 669 691 0.96

15 15 0.00046 0.17 14.8 0.1 1 20 1059 1078 1059 1081 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3e-05	0.011	18.5	0.7	1	23	163	185	163	185	0.95
2	15	0.0013	0.48	13.3	1.2	3	23	193	213	192	213	0.99
3	15	0.00011	0.041	16.7	0.5	1	23	322	344	322	344	0.98
4	15	0.34	1.2e+02	5.7	0.3	1	23	351	374	351	374	0.81
5	15	1e-06	0.00037	23.1	3.8	1	23	398	420	398	420	0.98
6	15	0.0043	1.5	11.7	0.1	1	23	433	455	433	455	0.95
7	15	4.2	1.5e+03	2.3	0.1	1	23	461	484	461	484	0.80
8	15	0.057	21	8.2	1.9	2	19	492	509	492	510	0.96
9	15	2e-05	0.0071	19.1	4.0	1	23	519	541	519	541	0.97
10	15	0.0027	0.99	12.4	0.3	2	23	547	568	546	568	0.97
11	15	9.5e-06	0.0035	20.1	0.4	1	23	576	598	576	598	0.98
12	15	0.0041	1.5	11.8	0.2	3	23	606	626	604	626	0.97
13	15	0.00013	0.048	16.5	0.3	1	23	632	654	632	655	0.95
14	15	0.078	28	7.8	1.8	1	23	669	691	669	691	0.96
15	15	0.00046	0.17	14.8	0.1	1	20	1059	1078	1059	1081	0.94

Sequence Information

Coding Sequence: ATGGATGAATCATTTGAATTGACATGGGAGGATTCATCCACGGTAGTACAAACAGAAGAAGTAATTTGTAGTATTGAAAATGAAATTCTCCCATCAGAAACTGAAGAATTTACCGGTGTCCAAGAAGAAACTGTAGCAGAGGAAGTTATAGAAATACAAGGAAAGGAAGAAGTTATAGAATTGTCGGATGAAGTAGGTGTTCCTGATATTCAGGAAACCCAGGAAGTTCAGGAAAATAATGATGGTGTTGTGTACCTACCAGAAGATAATGTACTGATGGTCAATGATCAAGGAGAAGGagaatatcaacaagagttcaTGGAGTACCCAGTATCTGAAGAGATTATAACAGGTGATTGGGGAGAAAATTGTACAGAAGAAATCATTGTTGGCTCCGAAGAAGCAGTTGGTACTGAAGAGGCAAACCAAGAAGATTTTGATATACCTCTTCCCACTGACCAAGATGAATATACAGCAGCCAGACCATATCCGTGCGATTTTTGCAGTAGAAGATTTAGAAAGAAGGCAAATCTTATGAATCACATGGTTGCACATCAGACTGATAGGCCCCATGGTTGTAACTTGTGTGGAGTACGTTATATAAGAAAATGCGATTTGATGAATCATCTTAAAattCATGCTTATATACCAGAATCAGACAGTATGGAGGAACAAAATATACAATCAATAGATGATTTTAATGATGGTACagggaagaagaaaaaaaacaaacaaattaagaaaaagaagaaaattaaagaaGAGTTTGACCAATTTGAAGAAGATTTTGGTGCTTCAAGTTCCCATACGTATAATTATGTAGGCGCAGACGTGAAGCTTATGGATCCGATCGCAAACAACATAAAACATGATTATGCTTATCTtcaagaagaagtagaagaagaagaagaggtGCAACAACCCACCGAATCCCGTTATCCCATTACCGATCCCAAAAAACCATTTGTCTGTCAGCATTGCGGTGTGGGATTTGCCAGGGAAAAGGCCATGATGTCTCATCTCAGgatgcattCTGAAGGTGACAGTCCTTTTGAATGTCAAAAGTGCGGCGAGATGTTTTGGGACGTACTACAAATGAAAGAACACGTCAAGGAAAAACACGGCGATGTAGAAGACTTCGACGAAGACGATGACGACGATTATTCCGAAGAAGATACGAAATATGGAACGTTCTATTGTTCGACTTGCGGTTTATCGTTTCATAGACAAGATAATCTTCGTAGACATCAAAGAATTCACGTTAAAGAAGAATTCGTTAACGAACACGAATTCGGTCACATATGCAACGTTTGTGGTGAATCTTTTCAAAAAGCTTTAGATTTGTTGGCACACGCGGAAGTACACGCCAGGACTTTGGAATATCGGTGTATGATATGCGGGGAACTGGCTGAGGATGAGCACGTGTTGGCTGTTCATGTACAGGCCAAACACGGAAAAAATCTTCCACCAAATACGTGTATGCTATGCGGAAGGTCTTGCAAAGATCGAAGAACGTTACTCAAACACTCTTGGGAACATTCAAAAGAAAAGGTGTTCGCTTGCAGCAAATGTGACAAAACGTTTCACAATAAAGCCCGTCTTAAAAGACACATGTTGTCGCACAGAAACAAGGTGGTAACTTGCGACGTGTGCGGTGAGGAATTCCCCGACGGTAGATCATTAATGAATCACAGGCACAGTCACAGCAACGTATCCGGCAGGCAGTTTCCTTGCAGAGAATGTGGGAAAACGTTCGGTTCGAGAAGTTCGCAGCAAATTCACATCAGGATACACACAGGCGAACGACCGTACGGTTGCAGATTTTGTTGGAAGGCGTTCGCAGATGGAGGAACTCTTCGAAAACACGAACGTATTCATACGGGAGAAAAACCGTACGCTTGCGCCGTATGTCCTCGCGCGTTTAATCAACGAGTAGTCTTAAGAGAACACATAAGATCTCATCATTCCGGACCGGACCCAAAATATTCTAATagTATGACGCCTTATTGTTGCTCGGTTTGTTCCGATATGTTTGCCACATCTCAGGATCTAATATTGCATCTGATTCACCATTGCGACATGAACACAGCCATGAAACGTCAACCGCAAGTCGGTCCTAGAAAATATAAACGTAGACGGAAACTGAAACCGCACGAATTGGAATTGATAACGAGGGTCGAAGAAGGCGAACATGAACAATCTGaggaTCTGGGAGACAATTATACGGATTCGGAAGAAGAGAAAGAAAGGAAGAGACGATTTACAAGAAGGCAACCGTCGAAGAAACAACTTAACTCACCAGAATCGCAAAAAGAATCCGTTTCCGAATCGTATGCGGAACTGTACAACAGTGTTTCATCAACAATTGAAAACATTAATTCTCTCGTTAATTCGAAATCGACGCCGAAAGCCAAACAGCAACAAGTCAAGAAATTAAAATCGGACCAATCGATTCCCAGTCGACCGAAAATGATTCACACCCAGAAGACGCGCGTACCGGTCGAATCTGGAGAAGATGGACGGATAAGGCATAAGACTAAAACTCTAATAACCAGAACGCAACCAACTGAAATAAAATCAACAACCGGTGAACGAATTCGCCCTAGGACGAAAAACGTCAACTATCACGTCCTACAAGAAAAACTCCCGCTAGCCACTTTCGAAGATGTCATCGACAAAGATCCCACCCAAGAAGCAGTCGATAATCTCTTAAAACAAGAAAACGTTATCGTCGAACCTGAACACGTTATAGAAGAATCGACTGCTACGCAACATAACAATGGCGTTATTTACATGGATCAATTTGAACATCCCACAGAAGTAGCTAACGAGCAGACCGTAGAAAGTGAAACGGTACAACTTCCTCCGGAACCGATGAACGTAGTCCAAGTGCGAAGGACGACGAGATCAAGAAGCGGAAATGTTAATAGTAACAGCAACAGTAGCAGTTTGAAACCTGGTAGGCATATTATTGGACCAGGAAGTAAAGTAAGACTGGTGAAGGAAGGAATGATCGTGTCTAAGGCCCGCAACAAAAAATCCGAATCGGAAAATGAATCGCCTCCCGATGTGAACCTTCAGTCGTCTATCAAGCAAGAAATTTTGGATCCGAGTCCGTTACACGAACTGGCCGAAATTTCCATGCAACACGCCAACGCTTCGTCTCACAGTCTCTTCAAGTGCGAGATGTGCAGTGAGGTGTTTACAGACAGGGCTCAGTTACTCGTTCACGTGCCCATACACATTTGA
Protein Sequence: MDESFELTWEDSSTVVQTEEVICSIENEILPSETEEFTGVQEETVAEEVIEIQGKEEVIELSDEVGVPDIQETQEVQENNDGVVYLPEDNVLMVNDQGEGEYQQEFMEYPVSEEIITGDWGENCTEEIIVGSEEAVGTEEANQEDFDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYIPESDSMEEQNIQSIDDFNDGTGKKKKNKQIKKKKKIKEEFDQFEEDFGASSSHTYNYVGADVKLMDPIANNIKHDYAYLQEEVEEEEEVQQPTESRYPITDPKKPFVCQHCGVGFAREKAMMSHLRMHSEGDSPFECQKCGEMFWDVLQMKEHVKEKHGDVEDFDEDDDDDYSEEDTKYGTFYCSTCGLSFHRQDNLRRHQRIHVKEEFVNEHEFGHICNVCGESFQKALDLLAHAEVHARTLEYRCMICGELAEDEHVLAVHVQAKHGKNLPPNTCMLCGRSCKDRRTLLKHSWEHSKEKVFACSKCDKTFHNKARLKRHMLSHRNKVVTCDVCGEEFPDGRSLMNHRHSHSNVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSNSMTPYCCSVCSDMFATSQDLILHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELELITRVEEGEHEQSEDLGDNYTDSEEEKERKRRFTRRQPSKKQLNSPESQKESVSESYAELYNSVSSTIENINSLVNSKSTPKAKQQQVKKLKSDQSIPSRPKMIHTQKTRVPVESGEDGRIRHKTKTLITRTQPTEIKSTTGERIRPRTKNVNYHVLQEKLPLATFEDVIDKDPTQEAVDNLLKQENVIVEPEHVIEESTATQHNNGVIYMDQFEHPTEVANEQTVESETVQLPPEPMNVVQVRRTTRSRSGNVNSNSNSSSLKPGRHIIGPGSKVRLVKEGMIVSKARNKKSESENESPPDVNLQSSIKQEILDPSPLHELAEISMQHANASSHSLFKCEMCSEVFTDRAQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01047655;
90% Identity: -
80% Identity: -