Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: -
Assembly: GCA_963978555.1
Location: OZ021713.1:18496820-18505720[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.8e-05 0.0044 18.5 0.7 1 23 161 183 161 183 0.95

2 15 0.0013 0.2 13.3 1.2 3 23 191 211 190 211 0.99

3 15 0.00011 0.017 16.7 0.5 1 23 314 336 314 336 0.98

4 15 0.15 22 6.9 0.3 1 23 343 366 343 366 0.89

5 15 9.8e-07 0.00015 23.2 3.8 1 23 390 412 390 412 0.98

6 15 0.012 1.8 10.3 0.0 1 23 425 447 425 447 0.94

7 15 4 6.2e+02 2.3 0.1 1 23 453 476 453 476 0.80

8 15 0.054 8.4 8.2 1.9 2 19 484 501 484 502 0.96

9 15 2.1e-05 0.0032 19.0 3.2 1 23 511 533 511 533 0.97

10 15 0.21 33 6.3 0.3 3 23 540 560 539 560 0.97

11 15 9.2e-06 0.0014 20.1 0.4 1 23 568 590 568 590 0.98

12 15 0.004 0.61 11.8 0.2 3 23 598 618 596 618 0.97

13 15 0.00013 0.019 16.5 0.3 1 23 624 646 624 647 0.95

14 15 0.075 12 7.8 1.8 1 23 661 683 661 683 0.96

15 15 0.00043 0.067 14.8 0.1 1 20 1052 1071 1052 1074 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.8e-05	0.0044	18.5	0.7	1	23	161	183	161	183	0.95
2	15	0.0013	0.2	13.3	1.2	3	23	191	211	190	211	0.99
3	15	0.00011	0.017	16.7	0.5	1	23	314	336	314	336	0.98
4	15	0.15	22	6.9	0.3	1	23	343	366	343	366	0.89
5	15	9.8e-07	0.00015	23.2	3.8	1	23	390	412	390	412	0.98
6	15	0.012	1.8	10.3	0.0	1	23	425	447	425	447	0.94
7	15	4	6.2e+02	2.3	0.1	1	23	453	476	453	476	0.80
8	15	0.054	8.4	8.2	1.9	2	19	484	501	484	502	0.96
9	15	2.1e-05	0.0032	19.0	3.2	1	23	511	533	511	533	0.97
10	15	0.21	33	6.3	0.3	3	23	540	560	539	560	0.97
11	15	9.2e-06	0.0014	20.1	0.4	1	23	568	590	568	590	0.98
12	15	0.004	0.61	11.8	0.2	3	23	598	618	596	618	0.97
13	15	0.00013	0.019	16.5	0.3	1	23	624	646	624	647	0.95
14	15	0.075	12	7.8	1.8	1	23	661	683	661	683	0.96
15	15	0.00043	0.067	14.8	0.1	1	20	1052	1071	1052	1074	0.94

Sequence Information

Coding Sequence: ATGGATGAATCATTTGGATTAACATGGGAGGATTCATCCACAGTAGTACAAACAGAAGAGGTAATTTGTGGTATTGAAAATGAAATCCTCCCATCGGAAACTGAAGAATTCACTGGTGTCCATGAGGAAACAGTAACAGATGAAGTAATAGAAATACAAGGAAAAGAAGAAGTTATAGAATTACCAGAAGTTCCTGACATTCAAGAAACACAAGAAGTACAAGAAAATGACGATCACCACATTATGTACCTACCAGATGGGAATGTACTTGTTGTCAATGATCAAGTTGATGAGGATTATCAAGAACAGCTTATGGAGTGCCAAGTATCTGAAGAAATTATAACTGGAGAATGGGGAGAAACATGCGCTGAAGAAATTgttgtAGGATCTGAAGAAGCAGTTGGTACTGAAGAAGCTAACCAACAAGATTTTGATATACCTCTTCCTACTGATCAAGATGAGTACACTGCAGCCAGACCTTATCCTTGCGATTTTTGCAGTAGAAGGTTTAGAAAGAAAGCAAATCTTATGAATCACATGGTAGCACATCAAACTGATAGACCTCACGGTTGTAATCTATGCGGGGTACGATATATTAGAAAATGTGATCTAATGAACCATCTCAAGATCCACGCTTATATACCAGAATCAGATGGATTAGAAGAGCAAAACATGCAAGTGATTGAATTGAACGAAAGcacagagaaaaagaaaaaagctAAACAAGTAAAGAAAAGGAAGAAAATCAAAGAGGAATTCGATCAATTCGAAGATGATTtaggaGCTTCAAGTTCACGTACATATAATTATGTAGAAGAAGATGTTAAACTTATGGAACAAATGTCCAATAATGTAAAACACGATTATGATTATTTGCAAGAGGAAGAGGTGCAACAACCTACAGAAACCCGTTATCCCATTACGGATCCAAAAAAACCATTCGTTTGTCAACATTGCGGAGTTGGATTTGCCAGAGAAAAAGCCATGATGTCCCATCTTAGGATGCATTCTGAAGGCGACAGCCCTTTCGAGTGTCAAAAATGTGGCGAAATGTTTTGGGACGTTATGCAAATGAAGGAACACGTCAAAGAAAAACACGGCGACGTCGAAGACTATGACGAAGACGACGACGATGATTATTCCGAAGAAGACACCAAATACGGAACCTTCTATTGTTCAACCTGCGGTTTATCCTTCCATAGacAAGACAATCTACGAAGACACCAAAGAATTCACGTCAAAGAGGAATTCGTCAACGAACACGAATTCGGTCATATTTGTAACGTTTGCGGTGAATCTTTTCAGGAAGCCTTGGATTTGTTGGCTCACGCCGAAGTGCACGCCAGAACGTTGGAATATAGGTGTATGATTTGCGGGGAATTGGCCGAAGATGAGCACGTATTAGCAGTTCACGTACAGgcGAAACACGGGAAGAATCTTCCACCAAACACTTGCATGTTGTGCGGAAGATCATGTAAAGACCGAAGGACTTTGTTGAAACATTCTTGGGAACATTCCAAAGAAAAGgtgTTTGCTTGCGGAAAGTGCGACAAGACTTTTCATAACAAAGCCCGTTTGAAAAGACACATGTTGTCGCATAGAAACAAAGTGGTGGCTTGCGACGTGTGCGGAGACGAGTTTCCCGATGGTAGATCTCTAATGAATCATCGACATAGTCATAGTAACGTTTCCGGAAGACAGTTTCCTTGTAGGGAATGTGGAAAAACGTTCGGATCGAGAAGTTCGCAGCAAATCCACATTAGGATACACACTGGTGAACGACCGTACGGTTGTAGATTTTGTTGGAAAGCCTTCGCTGACGGTGGAACTCTTCGAAAACACGAACGTATCCATACCGGCGAAAAACCGTACGCTTGCGCAGTCTGCCCGCGCGCTTTCAATCAACGAGTCGTCTTAAGAGAACACATACGATCCCACCACTCCGGACCGGATCCTAAATATTCCAACAGCATGACTCCTTATTGTTGTTCGGTGTGTTCGGATATGTTCGCAACGTCGCAAGATCTAATTTTACATCTGATCCATCATTGCGACATGAACACCGCTATGAAACGTCAACCCCAAATCGGTCCTAGAAAATATAAACGAAGAAGAAAACTAAAACCGCACGAATTGGAATTGATAACGCGGGTAGAGGAAGGCGATAACGATCAATCCGAGGATTTGGGTGATAATTATACCGATTCGGAAGAGGAGAAAGATAGGAAGCGGAGGTATACGAAACGACAACCCAGTAAGAAAGTTCAGTCTCCGGAATCGCCGAAAGAACCCGTCTCGGATTCGTACGCCGAGCTTTATAACAGCGTGTCTTCAACTATAGaaaacaTCAATTCTCTTGTAAATTCGAAATCAGCTCCCAAAGCTAAACaacaaatgaagaaattgaaagCGGACCAATCGATACCGAGTAGACCGAAAATGATACACACCCAAAAGACGCGCGTACCGGTGGAATCGGGAGAAGACGGACGTGTCCGGCACAAAACGAAAACTTTGGTCACCAGAACGCAACCTGCCGAGATAAAATCAGCCACCGGTGAACGGATACGTCCGAGAACGAAAAACGTCAACTATCACATCCTTCAAGAAAAACTACCTCTAGCAACATTCGAAGTCGTTTCCGACAAAGATCCCACTCAAGAAGCCGTCGAAAATTTGTTGAAACAAGAAAACGTCATCGTCGAACCCGAACATTTAGTCGAAGAACAACCTCAACATAACAACGGCGTTATTTATATGGAGGATCAATTCGAACATCCGACGGAAGTGGCTACCGAACAAACAATCGAAAGCGAAACTGTTTTACCACCACCACCTCCTCTTACTGCCGCTCCCGAACCGGTCACCGCCATTGAAGTACGGAGAATAACCAGATCGAGAAGCGGGAATGTCGGCAACAGCAATAGTTTGAAGCCTGGAAGGCATATCATCGGACCTGGTAGTAAAGTAAGACTGGTGAAAGAAGGTATGATCGTGTCGAAGGCTCGTAACAAAAAATCGGAATCGGAAAACGAATCGCCTTCGGATGTGAATCTACAGCAACCGGTGAAACAAGAAGTGTTGGATTCGAGTCCGTTGCACGAATTGGCGGAAATTTCCATGCAACACGCGAACGCGTCGTCGCAGAATTTGTTCAAATGCGAGATGTGCAGTGAGGTGTTTACGGATAGGGCTCAGTTACTTGTCCACGTTCCCGTACACATTTGA
Protein Sequence: MDESFGLTWEDSSTVVQTEEVICGIENEILPSETEEFTGVHEETVTDEVIEIQGKEEVIELPEVPDIQETQEVQENDDHHIMYLPDGNVLVVNDQVDEDYQEQLMECQVSEEIITGEWGETCAEEIVVGSEEAVGTEEANQQDFDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYIPESDGLEEQNMQVIELNESTEKKKKAKQVKKRKKIKEEFDQFEDDLGASSSRTYNYVEEDVKLMEQMSNNVKHDYDYLQEEEVQQPTETRYPITDPKKPFVCQHCGVGFAREKAMMSHLRMHSEGDSPFECQKCGEMFWDVMQMKEHVKEKHGDVEDYDEDDDDDYSEEDTKYGTFYCSTCGLSFHRQDNLRRHQRIHVKEEFVNEHEFGHICNVCGESFQEALDLLAHAEVHARTLEYRCMICGELAEDEHVLAVHVQAKHGKNLPPNTCMLCGRSCKDRRTLLKHSWEHSKEKVFACGKCDKTFHNKARLKRHMLSHRNKVVACDVCGDEFPDGRSLMNHRHSHSNVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSNSMTPYCCSVCSDMFATSQDLILHLIHHCDMNTAMKRQPQIGPRKYKRRRKLKPHELELITRVEEGDNDQSEDLGDNYTDSEEEKDRKRRYTKRQPSKKVQSPESPKEPVSDSYAELYNSVSSTIENINSLVNSKSAPKAKQQMKKLKADQSIPSRPKMIHTQKTRVPVESGEDGRVRHKTKTLVTRTQPAEIKSATGERIRPRTKNVNYHILQEKLPLATFEVVSDKDPTQEAVENLLKQENVIVEPEHLVEEQPQHNNGVIYMEDQFEHPTEVATEQTIESETVLPPPPPLTAAPEPVTAIEVRRITRSRSGNVGNSNSLKPGRHIIGPGSKVRLVKEGMIVSKARNKKSESENESPSDVNLQQPVKQEVLDSSPLHELAEISMQHANASSQNLFKCEMCSEVFTDRAQLLVHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01047655;
90% Identity: iTF_00911322;
80% Identity: -