Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421411.1:335953-347737[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3e-05 0.0062 18.5 0.7 1 23 161 183 161 183 0.95

2 15 0.0014 0.28 13.3 1.2 3 23 191 211 190 211 0.99

3 15 0.00012 0.024 16.7 0.5 1 23 315 337 315 337 0.98

4 15 0.15 32 6.9 0.3 1 23 344 367 344 367 0.89

5 15 1e-06 0.00021 23.1 3.8 1 23 391 413 391 413 0.98

6 15 0.012 2.5 10.3 0.0 1 23 426 448 426 448 0.94

7 15 4.2 8.7e+02 2.3 0.1 1 23 454 477 454 477 0.80

8 15 0.058 12 8.2 1.9 2 19 485 502 485 503 0.96

9 15 2.2e-05 0.0045 19.0 3.2 1 23 512 534 512 534 0.97

10 15 0.23 47 6.3 0.3 3 23 541 561 540 561 0.97

11 15 9.8e-06 0.002 20.1 0.4 1 23 569 591 569 591 0.98

12 15 0.0042 0.87 11.8 0.2 3 23 599 619 597 619 0.97

13 15 0.00013 0.028 16.5 0.3 1 23 625 647 625 648 0.95

14 15 0.08 16 7.8 1.8 1 23 662 684 662 684 0.96

15 15 0.00047 0.096 14.8 0.1 1 20 1053 1072 1053 1075 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3e-05	0.0062	18.5	0.7	1	23	161	183	161	183	0.95
2	15	0.0014	0.28	13.3	1.2	3	23	191	211	190	211	0.99
3	15	0.00012	0.024	16.7	0.5	1	23	315	337	315	337	0.98
4	15	0.15	32	6.9	0.3	1	23	344	367	344	367	0.89
5	15	1e-06	0.00021	23.1	3.8	1	23	391	413	391	413	0.98
6	15	0.012	2.5	10.3	0.0	1	23	426	448	426	448	0.94
7	15	4.2	8.7e+02	2.3	0.1	1	23	454	477	454	477	0.80
8	15	0.058	12	8.2	1.9	2	19	485	502	485	503	0.96
9	15	2.2e-05	0.0045	19.0	3.2	1	23	512	534	512	534	0.97
10	15	0.23	47	6.3	0.3	3	23	541	561	540	561	0.97
11	15	9.8e-06	0.002	20.1	0.4	1	23	569	591	569	591	0.98
12	15	0.0042	0.87	11.8	0.2	3	23	599	619	597	619	0.97
13	15	0.00013	0.028	16.5	0.3	1	23	625	647	625	648	0.95
14	15	0.08	16	7.8	1.8	1	23	662	684	662	684	0.96
15	15	0.00047	0.096	14.8	0.1	1	20	1053	1072	1053	1075	0.94

Sequence Information

Coding Sequence: ATGGATGAATCATTTGGCTTAACATGGGAGGATTCATCCACAGTAGTACAAACAGAAGAAGTAATTTGTGGTATTGAAAATGAAATCCTCCCATCGGAAACTGAAGAATTCACTGGTGTCCACGAGGAAACAGTAACAGATGAAGTAATAGAAATACAAGATAAAGAAGAAGTTATAGAATTGCCAGAAGTTCCTGACATTCAAGAAACACAGGAAGTACAAGAAAATGATGATCACCACATTATGTACCTACCAGATGGTAATGTGCTTGTTGTCAACGATCAAGTTGATGAGGATTATCAAGAACAACTTATGGAGTGCCAAGTATCTGAAGAAATTATAACTGGAGAATGGGGAGAAACCTGCGCTGAAGAAATTGTTGTTGGATCTGAAGAAGCAGTTGGTACTGAAGAAGCAAACCAACAAGATTTCGATATACCTCTCCCTACTGATCAAGATGAATACACTGCAGCCAGACCTTATCCTTGTGACTTTTGCAGTAGAAGATTTAGAAAGAAAGCTAATCTTATGAATCACATGGTAGCACATCAAACCGATAGACCTCACGGTTGTAATCTATGCGGGGTACGATATATAAGAAAATGTGATCTAATGAACCATCTCAAGATCCACGCTTACATACCAGAATCAGAGGGTTTAGAAGAACAAAACATACAAGCGATAGATGAATTGAATGAGAGTAcagagaaaaagaaaaaaactaaacAAGTTAAGAAAAGGAAGAAAATCAAAGAGGAATTCGATCAATTCGACGACGatttaggaGCTTCAAGTTCTCGTACATATAATTATGTAGAAGAAGACGTTAAACTTATGGAACAAATGTCCAATAATGTAAAACACGATTATGATTATTTGCAAGAGGAAGAGGTGCAACAACCTACAGAAACCCGCTATCCCATAACGGATCCTAAAAAACCATTTGTTTGTCAACATTGTGGAGTTGGATTTGCTCGAGAAAAGGCAATGATGTCCCATCTCAGgATGCATTCTGAAGGCGACAGCCCTTTCGAATGCCAAAAATGTGGCGAAATGTTTTGGGACGTCATGCAAATGAAAGAGCACGTCAAAGAAAAACACGGCGACGTCGAAGACTACGACGAAGACGACGATGACGATTATTCGGAAGAAGACACCAAATACGGAACCTTCTATTGTTCAACCTGCGGTTTATCCTTCCATAGACAAGACAATCTACGAAGACATCAAAGAATTCACGTCAAAGAGGAATTCGTCAACGAACACGAATTCGGTCACATCTGTAACGTTTGCGGTGAATCTTTTCAGGAAGCCTTAGATTTGTTAGCACACGCAGAAGTGCACGCCAGGACGTTGGAATATAGATGTATGATTTGCGGAGAATTGGCAGAGGACGAGCACGTATTAGCAGTTCACGTACAGgcAAAACACGGAAAAAATCTTCCACCAAACACTTGCATGTTGTGCGGAAGATCCTGTAAGGACCGAAGGACTTTGCTGAAACATTCTTGGGAACATTCTAAAGAAAAGgtatttGCTTGCGGAAAGTGCGACAAAACTTTTCATAATAAAGCCCGTCTCAAAAGACACATGTTATCGCATAGAAACAAAGTAGTGGCTTGCGACGTGTGCGGGGACGAATTTCCCGACGGTAGATCTCTAATGAATCACCGACATAGTCACAGTAACGTTTCCGGAAGACAATTTCCTTGTAGAGAATGTGGAAAAACGTTCGGATCAAGAAGTTCGCAGCAAATCCACATTAGGATTCATACTGgCGAACGACCGTACGGTTGTAGATTTTGTTGGAAAGCCTTCGCCGACGGTGGAACTCTTCGAAAACACGAACGGATACATACCGGCGAAAAACCGTACGCTTGCGCAGTCTGCCCGCGCGCTTTCAATCAACGAGTCGTCTTAAGAGAACACATTCGATCTCACCACTCCGGACCGGATCCCAAATATTCCAACAGCATGACGCCTTATTGTTGTTCGGTGTGTTCGGATATGTTCGCAACGTCGCAAGATCTAATCTTACATCTGATCCACCATTGCGACATGAACACCGCAATGAAACGTCAACCCCAAATCGGTCCTAGAAAATATAAACGACGAAGAAAACTAAAACCGCACGAATTGGAATTGATAACGCGCGTCGAAGAAGGCGATAACGATCAATCCGAGGATTTGGGTGACAATTACACCGATTCGGAGGAGGAGAAAGATCGAAAGCGACGGTACACGAAACGACAGCCGAGCAAGAAAGTTCAATCTCCGGAATCGCCGAAAGAACCAGTAACCGATTCGTACGCTGAGCTTTACAACAGCGTATCTTCAACTATAgaAAACATCAATTCTCTTGTAAATTCGAAATCGACTCCCAAAGCTAAACAACAAGTAAAGAAATTGAAAGTGGACCAATCGGTGCCGAGTCGACCGAAAATGATACACACCCAAAAGACGCGCGTACCGGTGGAATCGGGAGAAGACGGACGTATACGGCATAAAACGAAAACTTTGGTCACCAGAACGCAACCTGCCGAAATAAAATCAGCTACCGGTGAACGGATACGTCCTAGAACGAAAAACGTCAATTATCACGTCCTTCAAGAAAAACTACCTCTCGCCACATTCGAAGACGTTTCCGATAAAGATCCCACTCGAGAAGCCGTcgaaaatttgttgaaacaaGAAAACGTTATCGTCGAACCGGAACATTTAATCGAAGAACCGCAACATAACAACGGCGTTATTTATATGGATCAGTTCGAACATCCGACGGAAGTGGCGACCGAACAAACTGTCGAAAGCGAAATTGCGCCACCGCCGCCGCCTCCTCCTGCTGCTGCTGCTTCTTCCGAACCGGTGACCACTATAGAAGTGCGAAGAGTGACGAGATCGAGAAGCGGGAATATTGGTAACGGTAATAGTTTGAAACCTGGAAGGAATATTATCGGACCTGGGAGTAAAgTAAGACTGGTGAAAGAAGGTATGATTGTCTCCAAGGCTCGTAACAAGAAATCCGAATCGGAAAACGAATCGCCGTCGGATTCGAATCTACATCAACCAGTGAAACAAGAAATATTGGATTCGAGTCCGTTACACGAATTGGCGGAAATTTCCATGCAACACGCGAACGCGACATCGCAGAATTTGTTTAAATGCGAGATGTGCAGTGAGGTGTTTACGGACAGGGCTCAGTTACTAGTCCACGTGCCCATACACATTTGA
Protein Sequence: MDESFGLTWEDSSTVVQTEEVICGIENEILPSETEEFTGVHEETVTDEVIEIQDKEEVIELPEVPDIQETQEVQENDDHHIMYLPDGNVLVVNDQVDEDYQEQLMECQVSEEIITGEWGETCAEEIVVGSEEAVGTEEANQQDFDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYIPESEGLEEQNIQAIDELNESTEKKKKTKQVKKRKKIKEEFDQFDDDLGASSSRTYNYVEEDVKLMEQMSNNVKHDYDYLQEEEVQQPTETRYPITDPKKPFVCQHCGVGFAREKAMMSHLRMHSEGDSPFECQKCGEMFWDVMQMKEHVKEKHGDVEDYDEDDDDDYSEEDTKYGTFYCSTCGLSFHRQDNLRRHQRIHVKEEFVNEHEFGHICNVCGESFQEALDLLAHAEVHARTLEYRCMICGELAEDEHVLAVHVQAKHGKNLPPNTCMLCGRSCKDRRTLLKHSWEHSKEKVFACGKCDKTFHNKARLKRHMLSHRNKVVACDVCGDEFPDGRSLMNHRHSHSNVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSNSMTPYCCSVCSDMFATSQDLILHLIHHCDMNTAMKRQPQIGPRKYKRRRKLKPHELELITRVEEGDNDQSEDLGDNYTDSEEEKDRKRRYTKRQPSKKVQSPESPKEPVTDSYAELYNSVSSTIENINSLVNSKSTPKAKQQVKKLKVDQSVPSRPKMIHTQKTRVPVESGEDGRIRHKTKTLVTRTQPAEIKSATGERIRPRTKNVNYHVLQEKLPLATFEDVSDKDPTREAVENLLKQENVIVEPEHLIEEPQHNNGVIYMDQFEHPTEVATEQTVESEIAPPPPPPPAAAASSEPVTTIEVRRVTRSRSGNIGNGNSLKPGRNIIGPGSKVRLVKEGMIVSKARNKKSESENESPSDSNLHQPVKQEILDSSPLHELAEISMQHANATSQNLFKCEMCSEVFTDRAQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01047655;
90% Identity: iTF_00736049;
80% Identity: -