Mbra013369.1
Basic Information
- Insect
- Microctonus brassicae
- Gene Symbol
- -
- Assembly
- GCA_940306215.1
- Location
- OW675809.1:1935752-1939833[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.6 1.7e+02 3.1 4.9 2 23 233 255 232 255 0.95 2 21 0.029 3 8.6 1.8 1 23 329 351 329 351 0.97 3 21 0.049 5 7.9 0.4 1 23 400 422 400 422 0.98 4 21 0.0022 0.23 12.2 0.4 1 20 468 487 468 489 0.95 5 21 0.13 14 6.5 2.3 1 23 501 524 501 524 0.95 6 21 0.027 2.7 8.8 2.7 3 23 531 551 529 551 0.96 7 21 0.00026 0.027 15.1 0.5 3 23 574 594 572 594 0.98 8 21 8.7e-05 0.0089 16.6 0.8 1 23 600 622 600 622 0.97 9 21 2.1e-07 2.2e-05 24.8 0.4 2 23 662 684 661 684 0.96 10 21 0.026 2.6 8.8 3.6 1 19 690 708 690 713 0.89 11 21 2.3e-05 0.0024 18.4 2.3 1 23 720 743 720 743 0.97 12 21 0.00069 0.071 13.7 0.4 3 23 752 772 750 772 0.93 13 21 0.034 3.5 8.4 0.1 2 20 831 849 830 849 0.95 14 21 0.00023 0.024 15.2 0.1 2 23 868 889 867 889 0.96 15 21 5.9e-05 0.006 17.1 0.4 2 23 906 927 905 927 0.96 16 21 0.00086 0.088 13.4 0.1 1 23 946 969 946 969 0.90 17 21 0.035 3.6 8.4 0.5 2 23 1031 1053 1030 1053 0.95 18 21 3.3e-05 0.0034 17.9 0.5 2 23 1077 1099 1076 1099 0.94 19 21 0.15 15 6.4 0.7 1 23 1105 1129 1105 1129 0.95 20 21 2.4 2.5e+02 2.6 2.3 1 23 1134 1157 1134 1157 0.94 21 21 0.076 7.8 7.3 0.0 2 23 1187 1209 1187 1209 0.93
Sequence Information
- Coding Sequence
- ATGGATGATGTCGTTGAGCTTGATAATGTTCGCAATTTGTGCAGATTGTGTCTATCAACGGATGAACCAAGATCGCCAATATTTGGCGTCCAAGAGTCGTCGGTGCCATTGGTGGAAAAAATACAAGCGTGTCTCTCCATTGAGgTTTTATCTAATGACAAATTATCGACtttgatatgtataaattgtaCAAAAAGTGTTAATCAATGGCATACATATAAAGAATCATGTCTACAGTCGCAGGAAAAATTACAGCGATGGCTGGCCATGCAAACCAAAGCATCAGCTGCACTTaTTGCAACGATTAAACCTGAGCCAAtggatattgaaatatatgagGATAATATTGAGATAGTTGAAATGCCAGAAGATGGGTCAGAGACTATGAACGATAGGCGAATGGATAATGTTTCGTGTATGAATAATTCAGGTAaagaaagaattaataataatcctgAACGATTGTTACATCAATCGGAAATTAAGAGCGAACCAAtcgatgatgatgaggttgaatgtaatgttgaaaatgaatCGGTGAATGAAagtgaattattgataaatccaATGGCATTGGGagctaataaaaatatggagccagattcaacacaaaaatttaatgCTGCGCGTGggtcaaagaaaaaaattcgacGTGGTCCTCATACACATTTCCGGGGCGTTAAAGTGTACAAACAACGTTGTCCACATTGTCATTTGAATTTACATTCAAAAACAGCGTATGCCAAACATGTGGAGCGTTATCATCGTAATTTATCGCATTCATCAAAGAATCCATCTCAATCTGGACCACGTAATGGTGGTAtgccatatataaataaagatgatGAACAGCAGCAGCAGAAGACAAATAATGATGTTGAAGATGAGGAAATGATTGAAGATGTTGAGGAGGAATTGGTTAGTTTAGAAAAAGACGCGCCATTGACCAAAGTTCAGGAGTCTATTATCAGTCAATTGAAAACATTCTCTTGCTATGCATGTCAGCAATCATTCAATGATCGTCGTAGTACATTAAATCATATACGCCAACATATGCCTGATTTGAGACCGTATACATGCATTGCATGCCTCACTGAATTTCCCGATCGGTCAATTTATAAACTTCATTGTGGCGCTTCATTTGAGTGCGCGATGAAAATTGCATTGGTTGTACCTAAACACGGCacggaaaaatatttcacttgcAATATGTGTTTGAGACCAATGCCAAATCGAAAAGAATTAATTAGTCATTTGTCGAAGCATTCTGATCGTCAATATGAACAATTAACAGCGCCAGTAAAATTACCACcgaaattaaaatcaataacatCATCTGGTACAAAATCTACAACAATAAAGACATTATTGCCGTATAGAAATGGGGATCCAGCGCACAATCACACGTGCGATTATTGTGGAATGATTTATCGTTACAAACCAAATATGGTGAAACATCAGGATTTATGCAAACGTTTATCACCTGATGAACGTTCGTCTTATCGTTGTGTTCATTGTGGAATGACATTTTTGGtattcaaaaaattccaatCGCATCTTGCAACTGAacacaataaaaaagatattatttgttaCGTTTGTAAcactaaatttaaattctcCAATGAATTTTTAGTTCATCATCAGAAGCATCGATTGGCAATTAGACCATCTGATGGACAAACATCTTGGAATAAAGTTACCACGACGAAATTTGGTTGCACTTCTTGTCCCAAAGATTTTTCAACACGTGCTGAATTATCCGAGCATCGAAATActcatttgaaaatgaaaatattttcttgtacAGTTTGTCGTCGTATGTTTGGTAATTCACAATCATTACAGGAGCACATGAACGATCATGGACCAACAGAAGTTGATCCAGATGTATCAGCAGCAGATTTTCTTGAACAAGGTGAATCAGAGGATCCAAATACCAGTGCATGGCCAGTTAATTTAGATCCAGCTGGTAGAAGCACCGAATGTACACAATGCGGCAAAAGTTTTGCCAATTATCCAAATTTACGTCGACACATACGTTCAGCGCACTCAGGCAATGAACATTTCAATTGTTTCAAGTGCACAAAAACATTTAGAAATGAAAGCGAATGGAATGATCATTGTGAGCGTGCACACAAAGAAAACTCAACGGGTTATCGGTGTAAttattgtaagaaaaaatttgacaATCGTGAGAGTATGGAATTACATCAACGCAACGTTCATGCTTTAACAGATGATTGTATGGCATGTGACATTTGTGGTAAAGAATTTGGCAATGAGacatcattaaaaattcatcgtGGTCATCATTTTAGACGCGATTCACGATTGAGTATTCGTAATATGCCACATCCAATGGACCAAGTacaagttgaaataaatgatgagCCTGTTGCGTCGTCATTgtcaattttaaaatcacccaaagtaaaaaaatcattctcCAATGGTTCATCACCAAAAGCTGTGACATCCGGTAATTTACAATGTCAAGTTTGTGACGATCGTTTTACTGATGTTCAAGATTTACGTAAGCATCTGTGGGACATTCATTGCGCAAAAAATAAACCTGAAAAAACATTCGCTGGTGATTTACAATGTGAATTATGTACAAATGTATTTGCCGATCAAAAATCTCTTGAGGATCACATGAATTGGCACAAAGATAATCCAATTTTATCTGATGGATTACAGCGACCCGTTGATATATCATGTGATATCTGTGGCAAATTTTATAGTTCACTTAAAGCATTGTGGAAACATAAAAAACTTCACAAGTCAACGGCTggtttaaaattttcatcaataaaaaaaccCTTACCAACACAATTTCCATGTCCAGTTTGTCGTAAAGTATTTGGCAATGAGACATCGATGAAAAAACATAAAGCTGCTGCGCATTTTACACGTCGTACAATATCATCGTTTTCATCACCAACAAGAAAACCGTCCACAAGCCAAGATGACGATGATATAAAACCAAAACGACCTAAATTggattttgatattattcgaAAAGCATATAATTTGGGTGAACCTTCAAGCAGTAATTTTAGCAGTAATAATTCCAGCAAAAAACCCGTAACATGTAGTATatgcaaaaaattattgccaAGTATGAGTTCACTATATAAACATCGACAGAATGTTCATAAACAAGATCTCAGTAAATCGTTGCCGTCTGCTCTTAACGATGAGATAATTGAACAGCAATCGGGTGTACCTTGCACCGGTTGtgacaaaatattttccaataccTCAAATATGAAACAACATTATACTAAAGTCCATGGAAATGGTGGTAAACATTATTGCAACATGGAGGGATGCAATGAGGTTTTTAATTCGCCATTGGCTAAACAAACACATGAAAAATCTCAtatgaatattctttatagttGTAATTTGTGTTCACGACATATGTTTACACGTATTGCaatgaataaacatttaacGAGTGAACATAAATCGGAATATCAACCGAGTATAGAGAAGAGCCTTTATAAAAAAACTGATCTTAACAGTTATGTTGTTAAGGGAGCAGAAGGTCGTGTTTGTCCAATGTGTAACATAACTTATCCCAATATTAAGGCTATGAAAATTCATTATGTGAAAATACACGAGAACAACTCTTAG
- Protein Sequence
- MDDVVELDNVRNLCRLCLSTDEPRSPIFGVQESSVPLVEKIQACLSIEVLSNDKLSTLICINCTKSVNQWHTYKESCLQSQEKLQRWLAMQTKASAALIATIKPEPMDIEIYEDNIEIVEMPEDGSETMNDRRMDNVSCMNNSGKERINNNPERLLHQSEIKSEPIDDDEVECNVENESVNESELLINPMALGANKNMEPDSTQKFNAARGSKKKIRRGPHTHFRGVKVYKQRCPHCHLNLHSKTAYAKHVERYHRNLSHSSKNPSQSGPRNGGMPYINKDDEQQQQKTNNDVEDEEMIEDVEEELVSLEKDAPLTKVQESIISQLKTFSCYACQQSFNDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELISHLSKHSDRQYEQLTAPVKLPPKLKSITSSGTKSTTIKTLLPYRNGDPAHNHTCDYCGMIYRYKPNMVKHQDLCKRLSPDERSSYRCVHCGMTFLVFKKFQSHLATEHNKKDIICYVCNTKFKFSNEFLVHHQKHRLAIRPSDGQTSWNKVTTTKFGCTSCPKDFSTRAELSEHRNTHLKMKIFSCTVCRRMFGNSQSLQEHMNDHGPTEVDPDVSAADFLEQGESEDPNTSAWPVNLDPAGRSTECTQCGKSFANYPNLRRHIRSAHSGNEHFNCFKCTKTFRNESEWNDHCERAHKENSTGYRCNYCKKKFDNRESMELHQRNVHALTDDCMACDICGKEFGNETSLKIHRGHHFRRDSRLSIRNMPHPMDQVQVEINDEPVASSLSILKSPKVKKSFSNGSSPKAVTSGNLQCQVCDDRFTDVQDLRKHLWDIHCAKNKPEKTFAGDLQCELCTNVFADQKSLEDHMNWHKDNPILSDGLQRPVDISCDICGKFYSSLKALWKHKKLHKSTAGLKFSSIKKPLPTQFPCPVCRKVFGNETSMKKHKAAAHFTRRTISSFSSPTRKPSTSQDDDDIKPKRPKLDFDIIRKAYNLGEPSSSNFSSNNSSKKPVTCSICKKLLPSMSSLYKHRQNVHKQDLSKSLPSALNDEIIEQQSGVPCTGCDKIFSNTSNMKQHYTKVHGNGGKHYCNMEGCNEVFNSPLAKQTHEKSHMNILYSCNLCSRHMFTRIAMNKHLTSEHKSEYQPSIEKSLYKKTDLNSYVVKGAEGRVCPMCNITYPNIKAMKIHYVKIHENNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000760; iTF_01002266; iTF_01560628; iTF_00996533; iTF_00997215; iTF_00452094;
- 90% Identity
- iTF_01000760;
- 80% Identity
- -