Mcol009827.1
Basic Information
- Insect
- Meteorus colon
- Gene Symbol
- -
- Assembly
- GCA_030523125.1
- Location
- JAPYZG010002612.1:6625-10648[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.8 1.6e+02 3.0 5.8 2 23 234 256 233 256 0.95 2 21 0.028 2.6 8.6 1.8 1 23 328 350 328 350 0.97 3 21 0.047 4.4 7.9 0.4 1 23 399 421 399 421 0.98 4 21 0.0013 0.12 12.9 0.4 1 20 467 486 467 488 0.94 5 21 0.13 12 6.5 0.5 1 23 500 523 500 523 0.86 6 21 0.19 17 6.1 2.9 2 23 529 550 528 550 0.96 7 21 5.8e-05 0.0054 17.1 0.3 1 23 571 593 571 593 0.98 8 21 0.00011 0.01 16.2 0.5 1 23 599 621 599 621 0.97 9 21 2.1e-07 1.9e-05 24.8 0.4 2 23 661 683 660 683 0.96 10 21 0.054 5 7.8 3.1 1 19 689 707 689 712 0.89 11 21 4.7e-06 0.00043 20.5 2.5 1 23 719 742 719 742 0.97 12 21 0.00067 0.063 13.7 0.4 3 23 751 771 749 771 0.93 13 21 0.033 3.1 8.4 0.1 2 20 830 848 829 848 0.95 14 21 0.00064 0.06 13.8 0.1 2 23 867 888 866 888 0.97 15 21 5.7e-05 0.0053 17.1 0.4 2 23 905 926 904 926 0.96 16 21 0.00083 0.078 13.4 0.1 1 23 947 970 947 970 0.90 17 21 0.1 9.6 6.9 0.8 2 23 1032 1054 1031 1054 0.95 18 21 3.2e-05 0.003 17.9 0.5 2 23 1078 1100 1077 1100 0.94 19 21 0.063 5.9 7.5 0.7 1 23 1106 1130 1106 1130 0.95 20 21 2.4 2.2e+02 2.6 2.3 1 23 1135 1158 1135 1158 0.94 21 21 0.099 9.2 6.9 0.0 3 23 1189 1210 1188 1210 0.93
Sequence Information
- Coding Sequence
- ATGGATGATGTCGTAGAGCTTGATAATGTACGCAATTTGTGCAGATTGTGTCTATCAACAGACGAACCAAGATCGCCAATATTTGGCGTCCAAGAGTCCTCTGTGCCATTGGCCGAAAAAATACAAGCGTGTCTCTCGATAGAGgTATTATCCAATGATAAAGTATCAACATTGATATGCATAAATTGCACCCATAGCATTAATAAATGGCACATGTATAAAGAATCATGTCTGAGATCACAAGAAAAATTACAGCGATGGCTGATGATGCAAACCAAAGCATCAGCTGCACTTATTGCAACGATAAAACCTGAACCAGTGGATGTTCAGGAGATATATGAAGACAATAtcgaaattgttgaaatgcCAGAAGATGAATCAGACGAAATGAATGAACGTCGTACGgagaatatttcatacatgaataattcagGTAAAGATAGAATGAGTAATAATCCTGAACGATTTTTAAATGCATCAGAAATTAAAAGTGAACCGTGCGATGACGATGATGTTGAATGCAACATCGAAAATGATTCAGTTAATGaaagtgaattattgattaacCCAATGGCATTGggtgcaaataaaaatatggaaccagattcaacacaaaaatttAACGCCGTGCGTggatcaaagaaaaaaattcgccGGGGCCCACATACTCATTTCCGTGGCGTTAAAGTTTATAAACAACGTTGCCCACATTGTCATCTGAACTTACATTCGAAAACATCTTATGCCAAACACGTAGAGCGCTATCATCGAAATTTGCCACATTcctcaaaaaatttatcacaatcGGGACAACGTAATGGCGGTATGCCATACCCAACCCAAGACATCCAACAGCCAAAAACCAATAATGTGATCGAGGATGAAGAAATGGTTGAAGATGTCGAGGAAGAATTGGTTAGTCTGGAGAAAGATGCTCCATTGACTAAAGTTCAGGAGTCTATCATCAGtcaattgaaaacattttcatgCTATGCATGCCAACAATCATTCAATGATCGTCGAAGCACATTAAATCACATTCGTCAGCATATGCCCGACTTGAGACCATACACATGTATTGCATGTCTTACAGAATTTCCCGATCGTTCAATATATAAACTTCATTGTGGCGCTTCATTTGAGTGCGCAATGAAAATCGCATTGGTTGTACCGAAACATGGTacggaaaaatattttacatgcAACATGTGTTTGAGGCCAATGCCAAATCGTAAAGAATTAATCAGTCATTTGTCAAAACATTCTGATCGTCAATATGAACAGTTAACTGCACCAATAAAATTACCACCGAAGCTGAAAACAATGGCATCAGCTAGTACAAAGTCATCGTCTACGAAAACGTTGCTACCATATAGAAATGGTGATCCAGCACACAATCACACATGCAATTATTGCGGAATGATTTATCGTTACAAGCCAAATATGGTGAAACATCAGGATATATGTAAACGTCTACCACCCGAAGAACGAACTTCTTATCGTTGTGTTTATTGTGGAATGACATTTTTggtattcaaaaaattccaatcacATATTGCGGCGGAACATAACAAAAAAGATCTCGTTTGTTACGTATGTAATTCCAAATTCCGATTTtctaatgaatttttgattcatcatcAGAAACATCGATTGGCAATTAAACCATCTGATGGACACGCGTCTTGGGATAAAGTTGCCAAAACGAAATTTAGTTGTACGACGTGCCCAGAAGAATTTCCGACGCGTGCACAACTCTCTGAGCACCGCAATActcatttaaaaatgaaaatattttcatgcacGGTTTGTCGACGAATGTTTGGAAATTCTCAAGCGTTACAAGAACACATGAATGATCATGGTTCTACGGAACTGAACCCGGATGTAGCAGCAGTGGATTTTCTGGATCAGGGTGAATCCGAAGATGCAAATGCTAGTACATGGTCAGCACATTCGGATCCAGGCATACGAAGCACTGAGTGCACACAATGTGGCAAAAGTTTTGCCAATTATCCAAACTTACGACGACATATACGATCGGCACATTCAGGTAATGACcgtttcaattgtttcaagtGTACAAAAACATTTAGAAATGAGGAGGAATGGAATGAACATTGTGAGCGTGCACATAAAGATATTGCACCCGGTTATCGTTGTAATTATTGCAAGAAGAAATTTGACAATCAAGATAGTATGGAACAGCATCAGCGCAATGTTCACGGTATAACAGAAGATTGTATGGCTTGTGACATCTGTGGCAAAGAATTTGGCAATGAAACATCATTGAAGATTCATCGTGGTCATCATTTCAGACGTGATTCACGACTCAGTATTCGTAACATGCCTCATCCAATGGATCAAGTAcaagttgaaataaatgatgagcCCCTTTCTACGTCAATGGTGAGCCCGAAGTCAACGAAATTGAAGAAATCATTCTCCAACGATTCATCGCCGAAAGCGGCAACTTCTGGCACTTTGCAGTGTCAAGTTTGTGATGATCGTTTCACTGATGTCCAAGATTTACGTAAGCATCTTTGGGATATTCACTGTGCAAAGAATAAACCTGAAAAAACTTTTACCGGTGAATTACAATGTGAATTGTGCACAAATGTATTTGCTGATGAAAAAAGTCTTGAGGAACATATGAAATGGCACAAAGAGAATCCCATTTTATCTGATGGATTGCAACGTCCCGTTGATATATCATGTGACATTTGTGGTAAATTTTATAGCTCACTCAAAGCATTGTGGAAACATAAAAAACTCCATAAATCAACGGCAACAGttggattgaaattttcatcagtgaAAAAAGCATTGCCAACGCAATTCCCATGTCCGGTTTGTCGTAAAGTATTCGGGAACGAGACATCAATGAAAAAGCATAAAGCGGCTGCGCATTTTACTCGTCGTACAATATCGTCATTTTCTTCACCAACGAGAAAACCGTCCACAAATCATGACGACGATGATATAAAGCCAAAGCGACCAAAATTGGATTTTGATATCATTCGTAAAGCATATAATTTGGGTGAGCCATCAAGCAGTAATTTTAGCTCAAACAATTCAAGTAAAAAACCTGTCACTTGCAGTACATGCAAAAAACTATTGCCAAGTATGAGTTCATTGTATAAACATCGACAGAATGTGCATAAACAAGATCTCAATAAGTCACTGCCAAATGTCATAAGTGACGAAATGATTGAGCAACAAAGTGGTGTACCTTGCACTGGTTGcgataaaatattctccaatACGTCAAATATGAAACAGCATTATACTAAAGTACATGGGAATGGTGGTAAACATTACTGCAATATGGAAGGATGCAATGAAGTATTCAGTTCACCATTGGCCAAGCAAACACATGAGAAGTCACACATGAATATTCTGTACAGTTGTAATTTGTGTTCACGACATATGTTCACGCGCATTGCTATGAACAAACATTTAACAAGTGAACACAAGTCTGAATATCAACCGGCTATAGAAAAAAGTCTTTACAAAAAAACAGACCTCAACAGTTATATTGTAAAGGGAGCGGATGGCCGTATTTGTCCGATGTGTAACATCACTTATCCCAATATTAAGgccatgaaaattcattatgtgAAAATACACGAAAGCACCTCATAA
- Protein Sequence
- MDDVVELDNVRNLCRLCLSTDEPRSPIFGVQESSVPLAEKIQACLSIEVLSNDKVSTLICINCTHSINKWHMYKESCLRSQEKLQRWLMMQTKASAALIATIKPEPVDVQEIYEDNIEIVEMPEDESDEMNERRTENISYMNNSGKDRMSNNPERFLNASEIKSEPCDDDDVECNIENDSVNESELLINPMALGANKNMEPDSTQKFNAVRGSKKKIRRGPHTHFRGVKVYKQRCPHCHLNLHSKTSYAKHVERYHRNLPHSSKNLSQSGQRNGGMPYPTQDIQQPKTNNVIEDEEMVEDVEEELVSLEKDAPLTKVQESIISQLKTFSCYACQQSFNDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELISHLSKHSDRQYEQLTAPIKLPPKLKTMASASTKSSSTKTLLPYRNGDPAHNHTCNYCGMIYRYKPNMVKHQDICKRLPPEERTSYRCVYCGMTFLVFKKFQSHIAAEHNKKDLVCYVCNSKFRFSNEFLIHHQKHRLAIKPSDGHASWDKVAKTKFSCTTCPEEFPTRAQLSEHRNTHLKMKIFSCTVCRRMFGNSQALQEHMNDHGSTELNPDVAAVDFLDQGESEDANASTWSAHSDPGIRSTECTQCGKSFANYPNLRRHIRSAHSGNDRFNCFKCTKTFRNEEEWNEHCERAHKDIAPGYRCNYCKKKFDNQDSMEQHQRNVHGITEDCMACDICGKEFGNETSLKIHRGHHFRRDSRLSIRNMPHPMDQVQVEINDEPLSTSMVSPKSTKLKKSFSNDSSPKAATSGTLQCQVCDDRFTDVQDLRKHLWDIHCAKNKPEKTFTGELQCELCTNVFADEKSLEEHMKWHKENPILSDGLQRPVDISCDICGKFYSSLKALWKHKKLHKSTATVGLKFSSVKKALPTQFPCPVCRKVFGNETSMKKHKAAAHFTRRTISSFSSPTRKPSTNHDDDDIKPKRPKLDFDIIRKAYNLGEPSSSNFSSNNSSKKPVTCSTCKKLLPSMSSLYKHRQNVHKQDLNKSLPNVISDEMIEQQSGVPCTGCDKIFSNTSNMKQHYTKVHGNGGKHYCNMEGCNEVFSSPLAKQTHEKSHMNILYSCNLCSRHMFTRIAMNKHLTSEHKSEYQPAIEKSLYKKTDLNSYIVKGADGRICPMCNITYPNIKAMKIHYVKIHESTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01001580;
- 90% Identity
- iTF_01560628; iTF_00996533;
- 80% Identity
- -