Dcoc008149.1
Basic Information
- Insect
- Dinocampus coccinellae
- Gene Symbol
- -
- Assembly
- GCA_963920625.1
- Location
- OY987187.1:5782125-5786185[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.56 41 4.7 5.0 2 23 233 255 232 255 0.96 2 21 0.03 2.2 8.6 1.8 1 23 314 336 314 336 0.97 3 21 0.05 3.7 7.9 0.4 1 23 385 407 385 407 0.98 4 21 0.0023 0.17 12.2 0.4 1 20 453 472 453 474 0.95 5 21 3.7 2.7e+02 2.1 1.8 1 23 486 509 486 509 0.91 6 21 0.044 3.2 8.1 2.1 2 23 515 536 514 536 0.96 7 21 8e-05 0.0058 16.8 0.9 1 23 557 579 557 579 0.98 8 21 0.00019 0.014 15.6 0.5 1 23 585 607 585 607 0.97 9 21 2.2e-07 1.6e-05 24.8 0.4 2 23 647 669 646 669 0.96 10 21 0.038 2.8 8.3 2.1 1 19 675 693 675 698 0.89 11 21 1.8e-05 0.0013 18.8 2.0 1 23 705 728 705 728 0.97 12 21 0.00071 0.052 13.8 0.4 3 23 737 757 735 757 0.93 13 21 0.093 6.8 7.1 0.1 2 20 816 834 815 834 0.95 14 21 0.00018 0.013 15.7 0.2 2 23 853 874 852 874 0.97 15 21 6e-05 0.0044 17.1 0.4 2 23 891 912 890 912 0.96 16 21 0.00089 0.064 13.5 0.1 1 23 933 956 933 956 0.90 17 21 0.036 2.6 8.4 0.5 2 23 1018 1040 1017 1040 0.95 18 21 3e-05 0.0022 18.1 0.6 2 23 1064 1086 1063 1086 0.94 19 21 0.068 5 7.5 0.8 1 23 1092 1116 1092 1116 0.96 20 21 1.4 1e+02 3.4 2.3 1 23 1121 1144 1121 1144 0.94 21 21 0.14 10 6.6 0.2 3 23 1175 1196 1174 1196 0.93
Sequence Information
- Coding Sequence
- ATGGATGATGTCGTTGAGCTTGATAATGTTCGAAATTTGTGCAGATTATGTCTATCAACGGATGAACCAAGATCGCCAATATTTGGCGTCCAAGAGTCATCGGTGCCATTGGCTGACAAAATACACGCCTGTCTCTCCATAGAGGTGTTatccaatgataaattatcaacatcaatatgtataaattgtacaaaaaatattaatcaatggCATACATATAAAGAAACATGTCTACGATCGCAAGATAAGCTACAGCGATGGCTAGCCATGCAAACCAAAGCATCAGCTGCACTCATTGCAACGATAAAACCAGAGcccattgatattgatatatacgAAGATAATGTTGAAGTAGTTGAAATGCCAGAAGATGAAATGGAATCAATAAATGATCGACGTACGGAAGatgttttatatatgagtacatcagataaagaaagaattaataataattcagagCGATTGTTACATGCGtcggaaataaaaaatgaaccgTGTGATGACGATGAGGCTGAATGTAACATTGAGAATGATTCGGTGAATGAAAgtgaattattgattaatcCAATGGCATTGGGTgccaataaaaatatggaGCCAGATTcaacacaaaaatttaatgctGCACGTggatcaaagaaaaaaatacgtcGCGGTCCTCATACACATTTTCGTGGTGTTAAAGTGTATAAACAACGTTGTCCACattgtcatttaaatttacattcaaaAACGGCATATGCCAAACACATAGAGCGTTATCATCGACAACATAATGGTGGTATACCATACACTAATGATGATATGAAACAGCAAAAGACGGCTAATGAAGGTGAAGATGAAGAGATGATTGAGGATGTTGAGGAAGAATTGGTTAGTTTAGAAAAAGATGCCCCATTAACCAAAGTTCAGGAGTCTATTATCAGTCAATTGAAAACATTTTCTTGCTATGCATGTCAGCAATCATTCAATGATCGTCGTAGTACATTAAATCACATTCGCCAACACATGCCAGACTTGAGACCATACACATGTATTGCATGCCTCACCCAATTTCCCGATCGGTCAATTTACAAACTTCATTGTGGCGCTTCATTTGAATGTGCAATGAAAATTGCACTGGTTGTACCGAAACACGGTACGGAAAAATACTTTACGTGTAATATGTGCTTGAGACCAATGCCAAATCGTAAAGAATTAATTAGTCATTTGTCGAAACATTCTGATCGGCAATATGAACAATTGACTGCTCCAATTAAAATGCCACCGAAATTAAAACCATTGGCATCATCAGGCGCAAAATCTGCACCcacaaaaacatcattacCATATCGTAATGGTGATCCAGCGCACAATCATACATGCGATTATTGTGGAATGATTTATCGTTATAAACCAAATATGGTGAAACATCAGGATTTATGTAAACGTCTACCACCTGAAGAACGAACGTCTTATCGTTGTATTCACTGTGGAATGACATTTTTGGTGTTTAAAAAATTCCAATCACACATTGCCTctgaacataataaaaaagatcTTGTTTGTTATGTTTGTAATGCCAAATTTCGATTttccaatgaatttttaattcatcatcagAAACATCGATTGGCAATTAGACCGTCTGATGCACAAACATCATGGGATAAAGTTACCACAACGAAATTTACTTGTACATCATGTCCAGAAGAATTTTCAACGCGCACGGAATTATCCGAACACAGAAATACccatttgaaaatgaaaatattttcatgcacAGTTTGTCGACGTATGTTTGGTAATTCTCAAGGATTACAAGAGCACATGAATGATCACGGCCCTACTGAATTAAATCCAGAAATATCCGCAGTAGATTTTCTAGATCAGAGTGAAACTGAGGCTGCAAATGCCAACACATGGCCAACACATTTAGATCCAAATGGTAGAAGCACTGAGTGCACACAATGTGGCAAAAGTTTTGCCAATTATCCCAATTTACGTCGACACATACGTTCAGCACATTCAGGTAATGATCGTTTTAGTTGTTACAAGTGCAcgaaaacatttataaatgaggATGAGTGGAATGAACATTGTGAACGTGCACATAAAGAAAATACACCGGGTTATCGTTGTAATTACtgcaagaaaaaatttgacaGTCAAGAAAGTATGGAATTACATCAACGCAATGTTCATGGTATAACTGAAAATTGTATGGCATGTGACATTTGCGGTAAAGAATTTGGCAATGAAACATCATTGAAGATTCATCGTGGACATCATTTCAGACGTGATTCAAGATTGAGTATTCGTAATATGCCACATCCAATGGATCAAGTacaagttgaaataaatgatgaaccCGTGGCAACTTCACTTATTAGTCCAAAATCtggaaaaatgaagaaaacatTTTCTAATGGTTCATCACCAAAAGCTGCAACATCCGGAAATTTACAGTGTCAAGTTTGTGAAGATCGTTTTACTGATGTTCAAGATTTACGTAGACATTTGTGGGATATTCATTGTGCAAAAAATAAACCTGAAAAATCATTTACCGGCGAATTACAATGTGAATTGTGTACAAATGTATTTGCTGATCAAAAAAGTCTTGAGGAACATATGAAATGGCACAAAGAAAATCCAATTTTATCTGATGGATTGCAACGACCCGTTGATATATCGTGTGATATATGTGGTAAATTTTATAGTTCACTAAAGGCATTGTGGAAACATAAAAAACTTCATAAATCAACAGCAACTGCAggattgaaattttcatctgtAAAAAAACCATTACCAACACAATTTCCATGTCCAGTTTGCCGTAAAGTATTTGGCAATGAAACATCAATGAAGAAACATAAAGCTGCGGCACATTTTACACGCCGTACAATATCATCATTCTCATCACCAACGAGAAAACCGTCCACAAGtcaagatgatgatgatatcaaACCAAAACGACCAAAATTGGATTTTGACATAATACGCAAAGCATATAATTTAGGTGAACCATCAGGCAGTAATTTTAGCAGTAATAATTCGAGTAAAAAACCAGTGACTTGTAGTAtttgcaaaaaattattacctaGTATGAGCTCACTATACAAACATCGTCAAAATGTGCACAAACATGATCTCAGTAAGTCATTGCCGGCTGCCATTAGTGATGATATAATTGAACAGCAAACTGGTGTGCCTTGCACTGGTTGTGACAAGATGTTTTCCAATATGTCAAATATGAAACAGCACTATACTAAAGTACATGGAAATGGTGGCAAACATTATTGCAATATGGAGGGATGCAATGAAGTGTTCAATTCACCATTGGCTAAGCAAACTCATGAAAAAACACACATGAATATTCTTTACAGTTGTAATTTGTGTTCACGCCATATGTTTACACGCGTTGCAATGAACAAACATTTAACTAGTGAACATAAATCTGAATATCAACCGAGTATAGAGAAGAGTCTCTATAAGAAAACTGATCTCAACAGTTATGTTGTTAAAGGAGCGGAGGGTCGCATTTGTCCAACCTGTCACATCACTTATCCCAATATTAAAgctatgaaaattcattacgTGAAGATACACGAGAACAATTCTTAA
- Protein Sequence
- MDDVVELDNVRNLCRLCLSTDEPRSPIFGVQESSVPLADKIHACLSIEVLSNDKLSTSICINCTKNINQWHTYKETCLRSQDKLQRWLAMQTKASAALIATIKPEPIDIDIYEDNVEVVEMPEDEMESINDRRTEDVLYMSTSDKERINNNSERLLHASEIKNEPCDDDEAECNIENDSVNESELLINPMALGANKNMEPDSTQKFNAARGSKKKIRRGPHTHFRGVKVYKQRCPHCHLNLHSKTAYAKHIERYHRQHNGGIPYTNDDMKQQKTANEGEDEEMIEDVEEELVSLEKDAPLTKVQESIISQLKTFSCYACQQSFNDRRSTLNHIRQHMPDLRPYTCIACLTQFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELISHLSKHSDRQYEQLTAPIKMPPKLKPLASSGAKSAPTKTSLPYRNGDPAHNHTCDYCGMIYRYKPNMVKHQDLCKRLPPEERTSYRCIHCGMTFLVFKKFQSHIASEHNKKDLVCYVCNAKFRFSNEFLIHHQKHRLAIRPSDAQTSWDKVTTTKFTCTSCPEEFSTRTELSEHRNTHLKMKIFSCTVCRRMFGNSQGLQEHMNDHGPTELNPEISAVDFLDQSETEAANANTWPTHLDPNGRSTECTQCGKSFANYPNLRRHIRSAHSGNDRFSCYKCTKTFINEDEWNEHCERAHKENTPGYRCNYCKKKFDSQESMELHQRNVHGITENCMACDICGKEFGNETSLKIHRGHHFRRDSRLSIRNMPHPMDQVQVEINDEPVATSLISPKSGKMKKTFSNGSSPKAATSGNLQCQVCEDRFTDVQDLRRHLWDIHCAKNKPEKSFTGELQCELCTNVFADQKSLEEHMKWHKENPILSDGLQRPVDISCDICGKFYSSLKALWKHKKLHKSTATAGLKFSSVKKPLPTQFPCPVCRKVFGNETSMKKHKAAAHFTRRTISSFSSPTRKPSTSQDDDDIKPKRPKLDFDIIRKAYNLGEPSGSNFSSNNSSKKPVTCSICKKLLPSMSSLYKHRQNVHKHDLSKSLPAAISDDIIEQQTGVPCTGCDKMFSNMSNMKQHYTKVHGNGGKHYCNMEGCNEVFNSPLAKQTHEKTHMNILYSCNLCSRHMFTRVAMNKHLTSEHKSEYQPSIEKSLYKKTDLNSYVVKGAEGRICPTCHITYPNIKAMKIHYVKIHENNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01001580;
- 90% Identity
- -
- 80% Identity
- -