Mhyp005888.1
Basic Information
- Insect
- Microctonus hyperodae
- Gene Symbol
- -
- Assembly
- GCA_030347285.1
- Location
- JAQQBR010000006.1:3005439-3009131[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.025 1.8 8.8 1.8 1 23 165 187 165 187 0.97 2 20 0.042 3.1 8.1 0.4 1 23 236 258 236 258 0.98 3 20 0.0019 0.14 12.4 0.4 1 20 304 323 304 325 0.95 4 20 0.12 8.4 6.8 2.3 1 23 337 360 337 360 0.95 5 20 0.036 2.6 8.4 2.2 3 23 367 387 365 387 0.96 6 20 0.00018 0.013 15.6 0.5 3 23 410 430 408 430 0.98 7 20 0.00021 0.015 15.4 0.4 1 23 436 458 436 458 0.96 8 20 1.8e-07 1.3e-05 25.0 0.4 2 23 498 520 497 520 0.96 9 20 0.1 7.3 7.0 3.6 1 19 526 544 526 549 0.88 10 20 2e-05 0.0015 18.6 2.3 1 23 556 579 556 579 0.97 11 20 0.0006 0.043 14.0 0.4 3 23 588 608 586 608 0.93 12 20 0.03 2.2 8.6 0.1 2 20 667 685 666 685 0.95 13 20 6.8e-05 0.0049 16.9 0.1 2 23 704 725 703 725 0.96 14 20 5.1e-05 0.0037 17.3 0.4 2 23 742 763 741 763 0.96 15 20 0.00074 0.054 13.7 0.1 1 23 784 807 784 807 0.90 16 20 0.03 2.2 8.6 0.5 2 23 869 891 868 891 0.95 17 20 2.9e-05 0.0021 18.1 0.5 2 23 915 937 914 937 0.94 18 20 0.057 4.2 7.7 0.8 1 23 943 967 943 967 0.96 19 20 2.1 1.5e+02 2.8 2.3 1 23 972 995 972 995 0.94 20 20 0.066 4.7 7.5 0.0 2 23 1025 1047 1025 1047 0.93
Sequence Information
- Coding Sequence
- ATGGATGATGTCGTTGAGCTTGATAATGTTCGTAATTTGTGCAGATTGTGTCTATCAACGGATGAACCAAGATCACCAATATTTAGCGTCCAAGAGTCGTCGGTGCCATTGGTAGAAAAGATACAAGCGTGTCTCTCCATTGAGGTTTTATCTAATGACAAATTGTCGACtttgatatgtataaattgtacaaaaaGTGTTAATCAATGGCATACATATAAAGAATCATGTCTACGATCGCAGGAAAAATTACAGCGATGGCTGACCATGCAAACCAAAGCATCAGCTGCACTTAATCCATCTGAATCTGGGCCACGTAATGGTGGTAtgtcgtatataaataaaaatgatgatgatgaacagCAGCAGAAGACAAATAATGATGTTGAAGATGAGGAAATGATTGAAGACGTTGAAGAGGAATTGGTTAGTTTAGAAAAAGACGCGCCATTGACCAAAGTTCAGGAGTCTATTATCAGTCAATTGAAAACATTCTCTTGCTATGCATGTCAGCAATCATTCAATGATCGTCGTAGCACATTAAATCATATACGCCAACATATGCCTGATTTGAGACCGTATACATGCATTGCATGCCTCACCGAATTTCCCGATCGGTCAATTTATAAACTTCATTGTGGCGCTTCATTTGAGTGCGCAATGAAAATTGCATTGGTTGTACCTAAACACGGTacggaaaaatatttcacttgcAATATGTGTTTGAGACCAATGCCAAAtcgaaaagaattaattagtCATTTGTCGAAACATTCTGATCGTCAATATGAACAATTAACAGCACCAGTAAAATTACCGCCGAAATTAAAATCAGTAACATCATCTGGTACAAAATctacaacaataaaaacattattgcCATATAGAAATGGCGATCCAGCGCACAATCATACGTGCGATTATTGCGGAATGATTTATCGTTACAAACCAAATATGGTGAAGCATCAGGATTTATGTAAGCGTTTATCACCTGATGAACGTTCGTCTTATCGTTGTGTTCATTGTGGAATGACATTTTTGgtattcaaaaaattccaatCGCATCTTGCAACTgaacacaataaaaaagatattatttgttacgTTTGTAAcactaaatttaaattctccAATGAATTTTTAGTTCATCATGAGAAGCATCGATTGGCAATTAGACCATCTGATGGGCAAACATCATGGAGTAAAGTTACCACAACGAAATTTGGCTGCAATTCTTGTCCCAAAGATTTTTCAACACGTGCTGAATTATCCGAGCATCGAAATActcatttgaaaatgaaaatattttcttgtacAGTTTGCCGTCGTATGTTTGGTAATTCACAAGCATTACAGGAGCACATGAGCGATCATGGACCAACTGAAGTTGATCCAGATATATCGGCAGCAGATTTTCTTGAACAGGGTGAATCAGAGGATCCAAATACCAGTTCATGGCCAGTTAATTTAGATCCAGCTGGTAGAAGCACTGAGTGTACACAATGCGGCAAAAGTTTTGCCAATTATCCAAATTTACGTCGACACATACGTTCAGCGCACTCTGGCAATgatcaatttaattgtttcaagtGCACGAAAACATTTAGAAATGAAAACGAATGGAATGACCATTGTGAGCGTGCCCATAAAGAAAACACTACTGGTTATCGGTGTAAttattgtaagaaaaaatttgacaATCGTGAGAGTATGGAATTACATCAACGCAACGTTCATGCATTAACAGATGACTGTATGGCTTGTGACATTTGTGGTAAAGAATTTGGAAATGAGacatcattaaaaattcatcgtgGCCATCATTTTAGACGTGATTCACGATTGAGCATTCGTAATATGCCACATCCAATGGACCAAGtacaagttgaaataaatgatgaaccTGCGACGCCGTCACTGTCTATTTCAAAGTCatccaaagtaaaaaaatcattctccAATGGTTCATCACCAAAACCTGCAACGTCTGGTAATTTACAATGTCAAGTTTGTGACGATCGTTTTACTGACGTTCAAGATTTACGTAAGCACCTATGGGACATTCATTGCGCAAAAAATAAACCTGAAAAAACATTCGCTGGCGATTTACAATGTGAATTATGTACAAATGTATTTGCCGATCAAAAAAATCTCGAGGATCACATGAATTGGCACAAAGATAATCCAATTTTATCTGATGGATTACAGCGACCCGTTGATATATCATGCGATATCTGTGGCAAATTTTATAGTTCACTAAAAGCATTGTGGAAACATAAAAAACTTCACAAGTCAACGGCAACTGTTGgcttaaaattttcatcgatAAAAAAACCCTTACCAACACAATTTCCATGTCCAGTTTGTCGTAAAGTATTTGGCAATGAGACATCGATGAAAAAACATAAAGCTGCTGCGCATTTTACACGTCGTTCAATATCATCGTTTGCATCACCAACGAGAAAACCGTCCACAAGCcatgatgacgatgatataAAACCAAAACGACCTAAATtggattttgatattattcgtAAAGCATATAATTTGGGTGAACCTTCAAGCAGTAATTTTAGCAGTAATAATTCCAGCAAAAAACCCGTAACATGTAGCATatgcaaaaaattattgccaAGTATGAgttcattatataaacatcGACAGAATGTTCATAAACAAGATCTCAATAAATCGTTGCCATCTGTTCTTAACGATGAGATAATTGAACAGCAATCGGGTGTGCCTTGCACCGGTTgtgacaaaatattttccaataccTCAAATATGAAACAACATTATACTAAAGTCCATGGAAATGGTGGTAAACATTATTGCAATATGGAGGGATGCAATGAAGTTTTTAATTCACCATTGGCTAAACAAACACATGAAAAAACTCATATGAATATTCTTTATAGTTGTAATTTGTGTTCACGACATATGTTTACACGTATTGCaatgaataaacatttaacGAGTGAACATAAATCGGAATATCAACCGAGTATAGAGAAGAgtctttataaaaaaactgATCTTAACAGTTATGTTGTTAAGGGAGCAGAAGGTCGTGTTTGTCCAATGTGTAACATAACTTATCCCAATATTAAGGctatgaaaattcattatgtGAAGATACACGAGAACAACTCTTAG
- Protein Sequence
- MDDVVELDNVRNLCRLCLSTDEPRSPIFSVQESSVPLVEKIQACLSIEVLSNDKLSTLICINCTKSVNQWHTYKESCLRSQEKLQRWLTMQTKASAALNPSESGPRNGGMSYINKNDDDEQQQKTNNDVEDEEMIEDVEEELVSLEKDAPLTKVQESIISQLKTFSCYACQQSFNDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPMPNRKELISHLSKHSDRQYEQLTAPVKLPPKLKSVTSSGTKSTTIKTLLPYRNGDPAHNHTCDYCGMIYRYKPNMVKHQDLCKRLSPDERSSYRCVHCGMTFLVFKKFQSHLATEHNKKDIICYVCNTKFKFSNEFLVHHEKHRLAIRPSDGQTSWSKVTTTKFGCNSCPKDFSTRAELSEHRNTHLKMKIFSCTVCRRMFGNSQALQEHMSDHGPTEVDPDISAADFLEQGESEDPNTSSWPVNLDPAGRSTECTQCGKSFANYPNLRRHIRSAHSGNDQFNCFKCTKTFRNENEWNDHCERAHKENTTGYRCNYCKKKFDNRESMELHQRNVHALTDDCMACDICGKEFGNETSLKIHRGHHFRRDSRLSIRNMPHPMDQVQVEINDEPATPSLSISKSSKVKKSFSNGSSPKPATSGNLQCQVCDDRFTDVQDLRKHLWDIHCAKNKPEKTFAGDLQCELCTNVFADQKNLEDHMNWHKDNPILSDGLQRPVDISCDICGKFYSSLKALWKHKKLHKSTATVGLKFSSIKKPLPTQFPCPVCRKVFGNETSMKKHKAAAHFTRRSISSFASPTRKPSTSHDDDDIKPKRPKLDFDIIRKAYNLGEPSSSNFSSNNSSKKPVTCSICKKLLPSMSSLYKHRQNVHKQDLNKSLPSVLNDEIIEQQSGVPCTGCDKIFSNTSNMKQHYTKVHGNGGKHYCNMEGCNEVFNSPLAKQTHEKTHMNILYSCNLCSRHMFTRIAMNKHLTSEHKSEYQPSIEKSLYKKTDLNSYVVKGAEGRVCPMCNITYPNIKAMKIHYVKIHENNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01001580;
- 90% Identity
- -
- 80% Identity
- -