Basic Information

Gene Symbol
nfxl1
Assembly
GCA_948107695.1
Location
OX403617.1:83723888-83727883[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 2 2.3e+04 -8.1 6.4 15 19 170 174 169 174 0.82
2 21 0.15 1.8e+03 -0.5 0.8 4 10 205 211 204 211 0.95
3 21 2.4e-08 0.00028 21.2 14.8 1 18 219 235 219 236 0.98
4 21 0.61 7.1e+03 -2.5 2.1 5 10 261 266 261 266 0.95
5 21 1.2e-06 0.014 15.8 13.2 1 19 272 291 272 291 0.93
6 21 1.4 1.6e+04 -3.6 1.8 6 10 316 320 315 320 0.89
7 21 2.3e-09 2.7e-05 24.5 12.8 1 19 326 344 326 344 0.99
8 21 0.52 6e+03 -2.2 1.4 5 10 368 373 368 373 0.95
9 21 3.6e-08 0.00042 20.6 10.0 1 18 379 396 379 397 0.96
10 21 0.31 3.6e+03 -1.5 0.4 1 5 406 410 406 415 0.75
11 21 2.3e-05 0.27 11.7 15.3 1 18 431 448 431 449 0.98
12 21 2.9e-08 0.00034 21.0 12.6 3 19 460 476 452 476 0.85
13 21 0.5 5.9e+03 -2.2 0.7 5 10 503 508 503 508 0.92
14 21 0.00068 7.9 7.0 11.3 8 19 520 531 512 531 0.87
15 21 0.17 2e+03 -0.7 5.0 3 11 544 552 534 553 0.82
16 21 0.46 5.3e+03 -2.1 0.8 6 10 611 615 610 615 0.89
17 21 4.3e-06 0.05 14.0 4.7 1 12 621 632 621 632 0.97
18 21 0.69 8.1e+03 -2.6 1.5 15 19 645 649 644 649 0.82
19 21 0.0008 9.4 6.7 13.4 4 18 662 676 660 677 0.92
20 21 0.57 6.7e+03 -2.4 0.9 8 13 682 687 681 688 0.78
21 21 1.2e-06 0.014 15.8 12.5 1 18 727 746 727 747 0.87

Sequence Information

Coding Sequence
ATGGCTTCAAATACATCCAAAGCAAGCAAACCAAAAAATGCACCCCCAAGCACAACCAACAAAAAAACAGAAAACCCTAATAATAATAAATCTCAACAATCGAAAAAATTTAAAGAAATTCAAAATAAAAACATGGAAATTGCCAAGAAAATAACAGAAAACTACGAATCTAGTTCTGATGAAGAAGAACTCGATGGTGGAAAAATCTTGGAAAAGTTGTACAAAAACTATACCGGTGGAAATGACCAGCTCCAAAAGACTGCAGCTTTTCTTGAAAATGTATTGCAATCAGGTTCTGCAATATGTCTCATTTGCATTGGATCGGTGAAGAGAGCTGATGCCGTCTGGTCCTGCAAATTCTGCTACTGTGTGTTCCATTTGACGTGTGTTAAGAGATGGGCAAACGACAGTATTGCATTACTCAAAGACAAGGGCACCGAAGAGCAAGGTTATTACAATAATTTGGGTGAATTCATTCCGAAAAAAGTCAAAGCTGTAAAGTGGTGTTGTCCACAATGTAGGCGGGACTATCAACCTCAAGATAGACCAACTCAGTATGAGTGCTTCTGTGGAAAAGAAGTGAACCCCGTCAATCAAGAATGGATAGTTCCTCATTCGTGCGGTGAGACATGCGAAAAGCTATTGCAACCCGAATGTGGCCACAAATGTTTGCTTCTTTGCCATCCCGGTCCATGTCCTCCATGTGCTCAGAGCATATTTTCGAGCTGCAAGTGTGGTAAATCTCCACCGAAAACTCTTCGTTGTTTCCAAAAGACCTGGACTTGCGAAAGAAAATGCTTGCAAGTTCTTCCATGTGGCAAGCACAAATGTGACCAGGTTTGTCATTCGGCTAAACAATGTCCGCCTTGTAGCAAGTCCAGTCTCCAGAAGTGTGTTTGCGGCAACGAGGAGGCAATGAAAAACTGCTCTCAGAGAATCTGGCAATGCAAGAAGGTTTGCAACAAAAAATATAGTTGCGGTTTACACAGTTGTAAACGAGTTTGTCATGATGGTGACTGTGGTGAATGTCCGCTTGGCCTGCCAAGATCCTGTCCATGTGGAAAAACTAGAAAAACAGCACCTTGCAACGAACCGATTGATACTTGTGAAGACACTTGCTACAAGTTACTATCCTGTGGAAAACACTATTGCACACAACGTTGCCACAAAGGTGATTGCAGCTTGTGCTTAATTGTTACTAAGAAGACCTGTCGCTGTGGTATGCACGAAAAAGAATTGCCCTGTTGGAAGGCTTTCAGTTGTGAAACAAAATGCAAGAAGATCCGAGATTGTGGAAAACATGCTTGCAACAAAAAGTGCTGTGATGATCAGTGCCCACCGTGTGATAAGGTTTGTGGAAAATTACTCTCTTGTAAGAAACACAAGTGCGCTTCAGTTTGTCACGATGGCCCGTGTTATCCCTGCAAACTACAATCACAGGTTAAATGTCGCTGCGGAAGTACTTGTATAACAGTACCGTGCGGTAGAGAACGTAGAGCTCGACCTACTTGTATGGAACCTTGCAGAATTCCATCCAAATGTCATCATCAAAATAAGCACAAATGCCACAAGGGTGACTGTCCGTCATGCAGTCAAGTTTGCGGGTTGAAAAACGACACAACAAATTGTCAACATTTATGCGCAGCTCGATGTCATGCTGCTGTGAAAGTTCCTTTCAAAAATACATCTAGTAATATTTTTGAATACAAGTTTGATAATTACGAAATCAAACAATTACCACATCCAAAATGTGAAAAGAAAGTAATGGTTGCTTGTATTGGTGGACACGAGATTGCCGAATGGCCATGTTGGAATTCTAAACCAACTTCATGTCAGCGTATTTGCGGACGAAATTTAAAATGTGGCAATCATAATTGCTCTTTTGTGTGTCACAAAGTTCCTAATCTGGATGATAAAAATGAGCAAGATAGCTGCAGACCATGTACTGAAGGATGCGAGATCAAACGGCCACCAGGTTGTGTTCATCGTTGCAAAAAACCTTGTCATCCACCTCCATGCGATATATGCTTAGCACAAATTAAATCAACTTGTCATTGTGGACTAACGCAGGTTTACTACAAGTGTTCAGAATATTTTTCAACTAAAGGCGAAACTCAAGATATTGTACGCCAAGAAAAATTGAAAAGTTGCGGAAATCGTTGCATTAAAAATTATCCATGTGGTCATCGTTGTTCAGCGGAATGTCATTCAGGACCATGTCCATATCCACAAAACTGCCGTAAAAAGGTCAAAATCTACTGCGAATGCAAACGCATTAAAATTGAAGTTACCTGTGAAAAATCTCGTTCTAAAGACTCTGTCATACCTTGCGACGACATTTGTCTAGTTAAAAAATCCGAAACCGAAAGAATTAAACAAGAAGAAGCCGAAAAACAAAGACTCGCCGAGGAGGAACGCAATCGCATTGAATTGGAACAATTCGAAAAAAGATTTGGCAAACGAAAACCAAGAGAACGCAAAGTAATCGCACAAGAAATAAAAACAAACAACAATCAAATAAAATTGCTGATTGGGTCTGCAGCAGCTATAGCTGTAGCCGCAGCTTTAACATTTTATTTGTATTTATAA
Protein Sequence
MASNTSKASKPKNAPPSTTNKKTENPNNNKSQQSKKFKEIQNKNMEIAKKITENYESSSDEEELDGGKILEKLYKNYTGGNDQLQKTAAFLENVLQSGSAICLICIGSVKRADAVWSCKFCYCVFHLTCVKRWANDSIALLKDKGTEEQGYYNNLGEFIPKKVKAVKWCCPQCRRDYQPQDRPTQYECFCGKEVNPVNQEWIVPHSCGETCEKLLQPECGHKCLLLCHPGPCPPCAQSIFSSCKCGKSPPKTLRCFQKTWTCERKCLQVLPCGKHKCDQVCHSAKQCPPCSKSSLQKCVCGNEEAMKNCSQRIWQCKKVCNKKYSCGLHSCKRVCHDGDCGECPLGLPRSCPCGKTRKTAPCNEPIDTCEDTCYKLLSCGKHYCTQRCHKGDCSLCLIVTKKTCRCGMHEKELPCWKAFSCETKCKKIRDCGKHACNKKCCDDQCPPCDKVCGKLLSCKKHKCASVCHDGPCYPCKLQSQVKCRCGSTCITVPCGRERRARPTCMEPCRIPSKCHHQNKHKCHKGDCPSCSQVCGLKNDTTNCQHLCAARCHAAVKVPFKNTSSNIFEYKFDNYEIKQLPHPKCEKKVMVACIGGHEIAEWPCWNSKPTSCQRICGRNLKCGNHNCSFVCHKVPNLDDKNEQDSCRPCTEGCEIKRPPGCVHRCKKPCHPPPCDICLAQIKSTCHCGLTQVYYKCSEYFSTKGETQDIVRQEKLKSCGNRCIKNYPCGHRCSAECHSGPCPYPQNCRKKVKIYCECKRIKIEVTCEKSRSKDSVIPCDDICLVKKSETERIKQEEAEKQRLAEEERNRIELEQFEKRFGKRKPRERKVIAQEIKTNNNQIKLLIGSAAAIAVAAALTFYLYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2