Basic Information

Gene Symbol
nfxl1
Assembly
GCA_963931855.1
Location
OZ007556.1:162174759-162179751[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 6.4e+04 -8.1 6.4 15 19 170 174 169 174 0.82
2 19 0.15 4.9e+03 -0.5 0.8 4 10 205 211 204 211 0.95
3 19 2.4e-08 0.00078 21.2 14.8 1 18 219 235 219 236 0.98
4 19 0.61 2e+04 -2.5 2.1 5 10 261 266 261 266 0.95
5 19 1.9e-06 0.06 15.2 14.0 1 19 272 291 272 291 0.94
6 19 1.4 4.4e+04 -3.6 1.8 6 10 316 320 315 320 0.89
7 19 3.3e-09 0.00011 23.9 12.5 1 19 326 344 326 344 0.99
8 19 0.52 1.7e+04 -2.2 1.4 5 10 368 373 368 373 0.95
9 19 3.6e-08 0.0012 20.6 10.0 1 18 379 396 379 397 0.96
10 19 0.31 1e+04 -1.5 0.4 1 5 406 410 406 415 0.75
11 19 2.3e-05 0.74 11.7 15.3 1 18 431 448 431 449 0.98
12 19 1.8e-07 0.0059 18.4 13.8 3 19 460 476 452 476 0.85
13 19 0.00093 30 6.5 11.3 8 18 520 530 512 531 0.86
14 19 0.29 9.4e+03 -1.4 4.7 3 11 544 552 534 553 0.84
15 19 0.33 1.1e+04 -1.6 0.9 6 10 611 615 610 615 0.90
16 19 2e-05 0.65 11.9 5.9 1 12 621 632 621 632 0.97
17 19 3.8e-05 1.2 11.0 14.5 4 18 662 676 660 677 0.93
18 19 0.65 2.1e+04 -2.5 0.8 8 13 682 687 681 688 0.77
19 19 1.8e-06 0.057 15.2 13.3 1 17 728 746 728 748 0.86

Sequence Information

Coding Sequence
atggCTTCAAACATTTCCAAAGCAAACAAACCAAAAAGTGTTCCTGCAAGTACAACCATCTCCAACAAAAAACCCGAAAACGCCAATAAGTCtcaacaatcgaaaaaattcaaagaaattcaaaataaaaacatggaAATGGCCaagaaaataacagaaaactATGAGTCCAGTTCTGATGAAGAAGAACTCGACGGTGGAAAAATTCTAGaaaaattatacaaaaactaCACTGGTGGAAATGATCAACTCCAAAAAACTGCAGCTTTTCTAGAAAATGTATTACAATCGGGGTCTGCAATATGTCTCATTTGCATTGGATCGGTAAAGAGGGCTGATGCAGTTTGGTCCTGTAAGTTCTGCTACTGTGTGTTCCATTTGTTGTGTGTTAAGAGATGGGCAAACGATAGTATTGCCTTGCTCAAAGACAAAGGTACCGAAGAGCAGGGATATTATAATAATTTGGGTGAATTCATTCCGAAAAAAGTAAAAGCTGTTAAGTGGTGTTGTCCACAGTGTCGACGAGACTATCAACCCCAAGATAGACCAACTGAATATGAGTGCTTTTGTGGTAAGGAAGTTAACCCTGTTAATCAGGAATGGATAGTACCTCATTCTTGTGGTGAGACTTGTGAAAAACCATTACAACCAGAGTGCGGTCATAAGTGTTTGCTTTTATGTCATCCTGGCCCATGTCCTCCTTGTGCTCAGAGCATATCTACAAGCTGCAAGTGTGGAAAATCTGCACCGAAAACACTTCGTTGCTTCCAAAAGACATGGACATGCGAAAGAAAATGCTTGCAGGTTCTTCCTTGTGGCAAGCATAAATGTGACCAGGTTTGTCATTCGACTAAACAATGTCCCCCTTGCAGCAAGTCCAGTCGTCAGAAATGTGTTTGTGGCCATGAGGAAGCAGTAAAAAACTGCTCACAAAGAGTTTGGCAGTGCAAGAAGGTCTGCAACAAAAAATATAGTTGCGGAATACACAGCTGCAAGCGAGTTTGTCATGATGGGTCATGCGGTGATTGTCCGCTTAGCCTTCCAAGATCCTGTCCATGTGGAAAAATTAGAAAAACAGCACCTTGCAATGAACCAATTGAAACTTGTGAAGACACTTGCTATAAGTTACTGTCTTGTGGAAAACATTATTGTACCCAACGTTGTCATAAAGGCGATTGCAGCTTGtgcTTAATTGTCACGAAAAAGACATGTCGCTGTGGTATGCATGAAAAAGAGCTACCCTGTTGGAAAGCTTTTAGTTGTGAAACAAAATGCAGGAAGATCCGAGATTGTGGAAAGCATGCTTGCAACAAAAagtgtTGTGATGATCAATGTCCACCATGTGATAAGGTTTGTGGAAAATTGCTGTCTTGTAAAAAGCACAAGTGCGGTTCAGTTTGTCACGATGGTCCCTGTTATCCTTGTAAACTACAATCTCAAGTTAAATGTCGGTGTGGAAGTACTTGTATAACAGTGCCTTGCGGTAGAGAGCGAAGAGCACGTCCCAATTGTTTGGAACCATGCAGaattccCTCCAAATGTCATCACCAAAATAAACACAAATGCCACAAAGGCGATTGCCCATCATGCAACCAGGTGTGCGGATTGAAAAATGACACGACAAACTGTGAACATTTATGTGCAGCACGTTGTCATGCTGCTGTaaaaattcctttaaaaaataaCACCAATAATATATTTGAATATAAGTTTGATAATtatgaaatgaaacaaattccACATCCGAAATGTGAAAAGAAAGTAATGGTTGCCTGTATTGGTGGTCATGAGATTGCCGAATGGCCATGTTGGAATTCCAAACCATCTTCGTGTCAACGGCTTTGTGGGCGTAATTTAAAATGTGGCAACCATAACTGCTCGCTTATCTGTCACAAAGTACCTAGTCCCGATGATACAAATGAACAAGAAGGCTGTGGATCATGTGTAGAAGGATGCGAAATTCAACGACCACCAGGCTGTGTTCATCGTTGCAAAAAACCTTGTCACCCCTCCCCCTGTGACCCATGTCTTGCACAAATTAAAGCAACATGTCATTGTGGACTAACGCAGGTTTATTACAAGTGTTCAGAGTATTATTCAATTAAAGGTACTCCTCAAGATATTGAGGAACGCCAAGAAAAACTGAAGAGTTGCGGAAATCGTTgcataaaaaatTACCCATGCGGTCACCGTTGTTCAGCTGAATGTCATTCAGGACCTTGTCCAAATCCACAAAACTGCCGTAAAAAGGTGAAAATCTACTGCGAATGCAAGCGTATTAAAACTGAAGTCTCTTGTGAAAAATCCCGTTCTAAGGATTCATTCATACCCTGCGACCAAATATGTCTAGTCATAAAAGCTGATTCAGAAAGAATCAAACATGAAGAAGCCGAGAAACAGAGACTCGCCGAAGAGGAGCGTAATCGCCTCGAATTGGAACAATTTGAGAAGAGATTCGGTAAACGCAAACCAAGGGAACGTAAAATAATCGCACaagaaatcaaaacaaacaacaatCAAATGAAGTTGCTGATTGGGACTGCAGCAGCTATAGCAGTAGCTGCAGCGTTagccttttatttttatttataa
Protein Sequence
MASNISKANKPKSVPASTTISNKKPENANKSQQSKKFKEIQNKNMEMAKKITENYESSSDEEELDGGKILEKLYKNYTGGNDQLQKTAAFLENVLQSGSAICLICIGSVKRADAVWSCKFCYCVFHLLCVKRWANDSIALLKDKGTEEQGYYNNLGEFIPKKVKAVKWCCPQCRRDYQPQDRPTEYECFCGKEVNPVNQEWIVPHSCGETCEKPLQPECGHKCLLLCHPGPCPPCAQSISTSCKCGKSAPKTLRCFQKTWTCERKCLQVLPCGKHKCDQVCHSTKQCPPCSKSSRQKCVCGHEEAVKNCSQRVWQCKKVCNKKYSCGIHSCKRVCHDGSCGDCPLSLPRSCPCGKIRKTAPCNEPIETCEDTCYKLLSCGKHYCTQRCHKGDCSLCLIVTKKTCRCGMHEKELPCWKAFSCETKCRKIRDCGKHACNKKCCDDQCPPCDKVCGKLLSCKKHKCGSVCHDGPCYPCKLQSQVKCRCGSTCITVPCGRERRARPNCLEPCRIPSKCHHQNKHKCHKGDCPSCNQVCGLKNDTTNCEHLCAARCHAAVKIPLKNNTNNIFEYKFDNYEMKQIPHPKCEKKVMVACIGGHEIAEWPCWNSKPSSCQRLCGRNLKCGNHNCSLICHKVPSPDDTNEQEGCGSCVEGCEIQRPPGCVHRCKKPCHPSPCDPCLAQIKATCHCGLTQVYYKCSEYYSIKGTPQDIEERQEKLKSCGNRCIKNYPCGHRCSAECHSGPCPNPQNCRKKVKIYCECKRIKTEVSCEKSRSKDSFIPCDQICLVIKADSERIKHEEAEKQRLAEEERNRLELEQFEKRFGKRKPRERKIIAQEIKTNNNQMKLLIGTAAAIAVAAALAFYFYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01223893;
90% Identity
iTF_00984705;
80% Identity
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