Basic Information

Insect: Melipona quadrifasciata
Gene Symbol: -
Assembly: GCA_001276565.1
Location: KQ435969.1:85872-90701[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00021 0.018 15.2 1.4 2 23 39 60 38 60 0.98

2 17 4.7e-05 0.004 17.2 2.9 1 23 243 265 243 265 0.96

3 17 0.058 4.9 7.5 0.3 2 23 269 290 268 290 0.95

4 17 0.04 3.4 8.0 2.4 3 23 365 386 364 386 0.95

5 17 0.00024 0.02 15.0 0.7 1 21 392 412 392 416 0.92

6 17 0.00063 0.053 13.7 3.2 2 23 495 516 494 516 0.95

7 17 0.00012 0.011 15.9 4.2 1 23 572 594 572 594 0.96

8 17 0.00016 0.013 15.6 0.7 1 20 599 618 599 620 0.94

9 17 0.027 2.3 8.5 0.6 2 23 631 652 631 652 0.97

10 17 1.6e-05 0.0014 18.7 0.6 2 23 691 712 690 712 0.97

11 17 1.5e-05 0.0012 18.8 1.6 1 23 717 739 717 739 0.95

12 17 0.00012 0.0098 16.0 2.9 1 23 745 767 745 767 0.98

13 17 2.6e-06 0.00022 21.2 0.4 1 23 783 805 783 805 0.95

14 17 2.1e-07 1.8e-05 24.6 0.6 1 23 811 833 811 833 0.99

15 17 2.3e-05 0.0019 18.2 0.2 1 23 839 861 839 861 0.97

16 17 8.4e-05 0.0071 16.4 4.1 1 23 867 889 867 889 0.96

17 17 0.0055 0.47 10.7 0.3 1 20 895 914 895 916 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00021	0.018	15.2	1.4	2	23	39	60	38	60	0.98
2	17	4.7e-05	0.004	17.2	2.9	1	23	243	265	243	265	0.96
3	17	0.058	4.9	7.5	0.3	2	23	269	290	268	290	0.95
4	17	0.04	3.4	8.0	2.4	3	23	365	386	364	386	0.95
5	17	0.00024	0.02	15.0	0.7	1	21	392	412	392	416	0.92
6	17	0.00063	0.053	13.7	3.2	2	23	495	516	494	516	0.95
7	17	0.00012	0.011	15.9	4.2	1	23	572	594	572	594	0.96
8	17	0.00016	0.013	15.6	0.7	1	20	599	618	599	620	0.94
9	17	0.027	2.3	8.5	0.6	2	23	631	652	631	652	0.97
10	17	1.6e-05	0.0014	18.7	0.6	2	23	691	712	690	712	0.97
11	17	1.5e-05	0.0012	18.8	1.6	1	23	717	739	717	739	0.95
12	17	0.00012	0.0098	16.0	2.9	1	23	745	767	745	767	0.98
13	17	2.6e-06	0.00022	21.2	0.4	1	23	783	805	783	805	0.95
14	17	2.1e-07	1.8e-05	24.6	0.6	1	23	811	833	811	833	0.99
15	17	2.3e-05	0.0019	18.2	0.2	1	23	839	861	839	861	0.97
16	17	8.4e-05	0.0071	16.4	4.1	1	23	867	889	867	889	0.96
17	17	0.0055	0.47	10.7	0.3	1	20	895	914	895	916	0.89

Sequence Information

Coding Sequence: ATGCATTCGCATGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAGAACACCAGACACGCCACAAAAAGACAGTTACAATGTTGCAAAGTCACCCCCGTCAGGTAAAAGATCGAACAAATGCCCATATTGTGGTaaacagtatatatatataacctCGTTTAGTAAACATTTGAAgaaacacgagagagagaaagaagagggaaaagaagatTCGATGCCCCTGGAAATATCATTCCATGAGGATGAACATAGTTTAGATCTTGATGATTACAAAGATACACGTCGAAATTTGAATACCGAGTATCGGAAGAAAGTCAAACAAAAAGAGATGGGCCAAGAGGACCATGGAGAGGAAGAACAAGGGATAAAAGGTTGCAATGACGGTGGTGATGgcgatggtgatggtgatggtgatggtgatggcgATGGCGATGGCAATGGCAATGGCAATGGCAATGGCGATGGCGATGGCGATGGTGGTGGAGGCGGCGGCGGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGAAGAGGAAGTgaaggaagagaaggaaacaacaataacaacaacaatgaTGATGATGTTAACGATGACACCGATGATGACGACGAATACGACGACTGCGAGAACGGCAAACGACTGGGTAATTCGAATAGAAAGGAGGAACAGGAAAGTCGCACTGTTCGTGCAGAAACATTTGCATGCGATAAGtgtacaaagaaattttttacgaaacgtAACCTGCGAAAGCACGCCATTTCGCATACTCTTCTCAACTGTAGCATATGCGAGGACGAATTCGATTCACTggagaaattaagaaatcatCGTGCGAAACATGTGGTTGAAGGTGTATTAACCGAGCAAGAGCTCGAGATGGATAAAGAATATGCGATCAAGAAGGAAACTCTTGGGTATGAGACAAGGAATAAACAAAGCGCAGAAAACGACGATGGGATGAAAGACGAACCAGTGGCAGGGTTGTTAGAGATAGAGAACAATTCGTCAAAGAAAAACGATAGAAATGCAGAGATTCATCGTCATTCGGGGATCAATCACGGCTGTAAGATGTGTTGTCAGCAATTCGCAACGAAGGAAATGTTGCAAAAGCATATGGAACAACAACACGAACGTGTGAAAACTTACAAGTGTACGCAATGTAACAAGACATTCGGTAATGAACTTACTTTACGTAATCATCTTATAGCCACTAATCATAAAACTTTCCTTCACGGGCAAGAATATGATCCTAATAAACGGATTAAAAGAGTCGCTGCGAGAGCCGCgcaaaaaattatcgataagaTTAAAACAGAAGATGGTTTGGAAGACTATgacgaggaagaggagaatAACGATAGAATTAATCGCGTTAATTCTACGGATGGTAATTACACTCGGAATAAGCGAGAGATTTCTTCGCAGAAAAGgcataattacaaaaaagaattgGAATGTGCGAGTTGCAACAAAAGATGCAGTTCAAAGCAGTCGTTGACGAAACATATGGAGCAACATGTAAAAGATGAACAACGAGTGATCAAGTCGGACAAACAAAAACAATCGGCGGAGAAGAAAGAATGGCAAAAAGACTATACCAACGAGAAGATCTATCAGAAAGAGAATAGAGATGACGATTACGATTCGGATTTCGAAAGTGGTTTGGATTGGCCGATGGATAATCACGAGTGCGCAAAGTGTAAAAAACGATACAGCACGAAAAAGTCGTTGTTGCGTCATCAATTGTTGCACGAAGAGCCAAATTTCGAGTGTGACATTTGCAATGTCAAGTTTTACCGCAAAGACAAGTTGAAAGCTCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAACATCTGCGGAGATACGTTTGAGAACAACGAGATTCTACGAGAACACAGATCAAAGCATGTTACCGAGGGTATTCTTACGGAGGAAGACTTGAGGGATATCGAGCCGCGACCCGAGGAAAAGAAGCCGGGCGAAAAAATTGGTAGAAAGAGAAGGACTGATATCGTGGGTTTGGAGTGTACGGAATGTAACAAGCAATACACATCGAGAAAAGGGCTTTTACGACACATTCAAGTCCACGAAGGGAAAAAATACCTCTGCGACATATGcccgaaaaaattttatagaaggGAACATTTAAAGATACATGTAGCCAAACATAATATGATCAAACCGTACAAGTGTACACGATGCACAAAGCGTTTCATTAAAGAGGAACAGCTAACGAGTCATTTGTCAAAACATGATCGAACGttcaagaaaaacaaagaaacggaCAGCTCGAAAAGATTTCTTTGCGAAATCTGTTCAAAGAGTTTTACGCAATCGACGACTCTGATCGCACATCTTAGGGCGCATAATGGCATAAAACCGTACGTTTGCGAGGTTTGTTCGCGACCGTTCACCACCAACGCTTACTTGAAAATGCACATGAGAACGCATACGCAAGAACGGCCGTATATTTGTCAATACTGTTCGCGAGCATTTGCTAGAGCTGATACGCTCGCCAATCATCTGACTTCCCACACAGGTGAGGCCAAGTATCATTGTAAATACTGTCCAAAAAATTTCCGTCGTTTGAAATCGCTGAAGGAGCACGTTTTTATTCACACCGGTCAAAGACCCTATGCCTGCCCAACCTGTGATCGACGGTTTAACAACAATGGAAGTCGATACGCTCATAGTAAAAGGTGTAAACAAACTTTTGTGCAAAATCAGAATCGTGCTCAAGCATTGTCGGCGCAAGTACAAACTCAACAAACTCCACAAACTCAACAAACCAGAGTGCTGCAACAAACCACTCTTGAACAAGGGCAAATAGTAAAACCACAGAACATTAAAACTATTACCATCACTAAACAACCTGAATCAGTCACCACTCAACAAACGGTTATGCAACTTCAGGAGATATTAATGCCTTTGATCCTTCCTCTTACGGTCACCCTTACTGACGTCGGTGAAGAAGTAATATTACCAGAGGGAACCAAAATATTTACTACGTCATAA
Protein Sequence: MHSHEEVRKVLSLKRTPDTPQKDSYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEDSMPLEISFHEDEHSLDLDDYKDTRRNLNTEYRKKVKQKEMGQEDHGEEEQGIKGCNDGGDGDGDGDGDGDGDGDGNGNGNGNGDGDGDGGGGGGGGRGRGRGRGRGRGRGRGRGRGRGSEGREGNNNNNNNDDDVNDDTDDDDEYDDCENGKRLGNSNRKEEQESRTVRAETFACDKCTKKFFTKRNLRKHAISHTLLNCSICEDEFDSLEKLRNHRAKHVVEGVLTEQELEMDKEYAIKKETLGYETRNKQSAENDDGMKDEPVAGLLEIENNSSKKNDRNAEIHRHSGINHGCKMCCQQFATKEMLQKHMEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDEEEENNDRINRVNSTDGNYTRNKREISSQKRHNYKKELECASCNKRCSSKQSLTKHMEQHVKDEQRVIKSDKQKQSAEKKEWQKDYTNEKIYQKENRDDDYDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTSHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQALSAQVQTQQTPQTQQTRVLQQTTLEQGQIVKPQNIKTITITKQPESVTTQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00982433; iTF_00983109; iTF_01417851;
80% Identity: -