Basic Information

Insect: Melipona bicolor
Gene Symbol: -
Assembly: GCA_030673865.1
Location: JAHYIQ010000013.1:95234-98917[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.16 17 6.7 2.3 1 23 193 215 193 215 0.94

2 18 0.00037 0.041 14.9 1.4 2 23 250 271 249 271 0.98

3 18 8.4e-05 0.0092 16.9 2.9 1 23 421 443 421 443 0.96

4 18 0.035 3.8 8.7 0.5 1 23 446 468 446 468 0.97

5 18 0.072 7.9 7.7 2.4 3 23 543 564 542 564 0.95

6 18 0.00042 0.046 14.7 0.7 1 21 570 590 570 594 0.92

7 18 0.0011 0.12 13.4 3.2 2 23 673 694 672 694 0.95

8 18 0.00022 0.024 15.6 4.2 1 23 751 773 751 773 0.96

9 18 0.00028 0.031 15.3 0.7 1 20 778 797 778 799 0.94

10 18 0.047 5.2 8.3 0.6 2 23 810 831 810 831 0.97

11 18 2.8e-05 0.0031 18.4 0.6 2 23 870 891 869 891 0.97

12 18 2.6e-05 0.0028 18.6 1.6 1 23 896 918 896 918 0.95

13 18 0.0002 0.023 15.7 2.9 1 23 924 946 924 946 0.98

14 18 4.6e-06 0.0005 20.9 0.4 1 23 962 984 962 984 0.95

15 18 3.7e-07 4.1e-05 24.4 0.6 1 23 990 1012 990 1012 0.99

16 18 4e-05 0.0044 17.9 0.2 1 23 1018 1040 1018 1040 0.97

17 18 0.00015 0.016 16.2 4.1 1 23 1046 1068 1046 1068 0.96

18 18 0.0097 1.1 10.5 0.3 1 20 1074 1093 1074 1095 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.16	17	6.7	2.3	1	23	193	215	193	215	0.94
2	18	0.00037	0.041	14.9	1.4	2	23	250	271	249	271	0.98
3	18	8.4e-05	0.0092	16.9	2.9	1	23	421	443	421	443	0.96
4	18	0.035	3.8	8.7	0.5	1	23	446	468	446	468	0.97
5	18	0.072	7.9	7.7	2.4	3	23	543	564	542	564	0.95
6	18	0.00042	0.046	14.7	0.7	1	21	570	590	570	594	0.92
7	18	0.0011	0.12	13.4	3.2	2	23	673	694	672	694	0.95
8	18	0.00022	0.024	15.6	4.2	1	23	751	773	751	773	0.96
9	18	0.00028	0.031	15.3	0.7	1	20	778	797	778	799	0.94
10	18	0.047	5.2	8.3	0.6	2	23	810	831	810	831	0.97
11	18	2.8e-05	0.0031	18.4	0.6	2	23	870	891	869	891	0.97
12	18	2.6e-05	0.0028	18.6	1.6	1	23	896	918	896	918	0.95
13	18	0.0002	0.023	15.7	2.9	1	23	924	946	924	946	0.98
14	18	4.6e-06	0.0005	20.9	0.4	1	23	962	984	962	984	0.95
15	18	3.7e-07	4.1e-05	24.4	0.6	1	23	990	1012	990	1012	0.99
16	18	4e-05	0.0044	17.9	0.2	1	23	1018	1040	1018	1040	0.97
17	18	0.00015	0.016	16.2	4.1	1	23	1046	1068	1046	1068	0.96
18	18	0.0097	1.1	10.5	0.3	1	20	1074	1093	1074	1095	0.89

Sequence Information

Coding Sequence: ATGGAGGAGGTAATCGATCAAACTATTGCTACAGAGCAAACATCGGAAGAGTGCCTGAGTCATGAGGAAGAAGACATTAAAGTTATCATACCCATTAACGAAGGAATGTTAAAACACGAAAGCCAGGATAACGAGTGtctcgaaaatattacaacgGTGGAGCatgattatatattacagCAGGAATGTGTACTATCTAATGCAAATGAACAGGAGCAGGAACAACAACagcatcatcatcattatcaacATCAACATCAACATCAACTTACCTCCGGAGAAACGTTTCAACGCGAAGATTACACAGAGTATGTAAATCTTTTGGTAAAAGCAGCGGATGCGACTGTAAAACAGGACGAAGCGAAAGAtgaagaaggaaaattggaTATTACGAACACGGATGTTCAGCCAGAAGCAGATTCTCAGTAtcaaaatgaaacgagaaGAAGCAAACGTAAATTAGTTCGACGAACCTGTGAGACGAAGCGGGATTCTGACGAggaaaattactttgaaaatttgaaccTAAGCTCGAGATTGAAGAAAGACCAATCCTCCGATCAGtcagagaaaatttttctatgttATCTGTGCGACAAAGAGTTCTTGTCGAAGAACGTTTTGAAGGAACATATGCATTCGCATGAAGAAGTACGAAAGGTATTGTCTCTGAAAAGAACACCAGACACGCCACAAAAAGACAGTTACAATGTTGCAAAGTCACCTCCGTCGGGTAAAAGATCGAACAAATGCCCATATTGTGGTaaacagtatatatatataacctCGTTTAGTAAACATTTGAAGaaacacgagagagagaaagaggagggaaaAGAAGATTCGATGCCCCTGGAAATATCATTCCACGAGGATGAACATAGTTTGGATCTTGATGATTACAAAGATACACGTCGAAATTTGAATACCGAGTATCGGAAGAAAGTCAAACAAAAAGAGATGGGCCAAGAGGACCATGAAGAGGAAGAACAAGGGATAAAAGGTTGCAATGACGCTGGTGATGGCGATGGCGATGGCGATGGCGATGGCGATGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGAAGTggaggaagagaaggaaacaacaataacaacaacaatgatgatgatgatgatgttAACGATGACACCGATGATGACGACGAATACGACGACTGCGAGAACGGCAAACGACTGGGTAATTCGAATAGAAAGGAGGAGCAGGAAAGTCGCACTGTTCGTGCAGAAACATTTGCATGCGATAAGtgtacaaagaaattttttacgaaacgtAACTTGCGAAAGCACGCCATTTCGCATACTCTTTTCAACTGTAGCATATGCGAGGACGAATTCGATTCACTggagaaattaagaaatcatCGTGCGAAACATGTGGTTGAAGGTGTATTAACCGAGCAAGAGCTCGAGATGGATAAAGAATATGCGATCAAGAAGGAAACTCTTGGGTATGAGACAGGGAATAAAGAAAGCGCAGAAAACGACGATGGGATGAAAGACGAATCAGTGGCAGCGTTGTTAGAGATAGAGAACAATTCGTCAAAGAAACACGATAGAAATGCAGAGATTCATCGTCATTCGGGGATCAATCACGGCTGTAAGATGTGTTGCCAGCAATTCGCAACGAAGGAAATGTTGCAAAAGCATATGGAACAACAACACGAACGTGTGAAAACTTACAAGTGTACGCAATGTAACAAGACATTCGGTAATGAACTTACTTTACGTAATCATCTTATAGCCACTAATCATAAAACTTTCCTCCATGGGCAAGAATATGATCCTAATAAACGGATTAAAAGAGTCGCTGCGAGAGCCGCgcaaaaaattatcgataagaTTAAAACAGAAGATGGTTTGGAAGACTATgacgaagaagaggagagtAACGATAGAATTAATCGCGTTAATTCTACGGATGGTAATTACACTCGGAATAAGCGAGAAATTTCTTCGCAGAAAAGGCATAATTACAAGAAAGAATTGGAATGTGCGAGTTGCAACAAAAGATGCAGTTCGAAGCAGTCGTTGACGAAACACATGGAGCAACATGTAAAAGATGAACAACGAGTGATGAACAAGTCGGAAAGACAAAAACAATCGGCGGAGAAGAAAGAATGGCAAAAAGACTATACCAACGAGAAGATCTATCAGAAAGAGAATAGAGATGACGATTACGATTCGGATTTCGAAAGTGGTTTGGATTGGCCGATGGATAATCACGAGTGCGCAAAGTGCAAAAAACGATACAGCACGAAAAAGTCGTTGTTACGTCATCAATTGTTGCACGAAGAGCCAAATTTCGAGTGTGATATTTGCAATGTCAAGTTTTACCGCAAAGACAAATTGAAAGCTCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAGTGCAACATCTGCGGAGATACGTTTGAGAACAACGAGATTCTACGAGAACACAGGTCAAAGCATGTTACCGAGGGTATTCTTACGGAGGAAGACTTGAGGGATATCGAGCCGCGACCCGAGGAAAAGAAGCCGGGCGAAAAAATTGGTAGAAAGAGAAGGACTGATATCGTGGGTTTGGAGTGTACGGAATGTAACAAGCAATACACATCGAGAAAAGGGCTTTTACGACACATTCAAGTCCACGAAGGGAAAAAATACCTGTGCGACATATGcccgaaaaaattttatagaaggGAACATTTAAAGATACATGTAGCCAAACATAATATGATCAAACCGTACAAGTGTACACGATGCACAAAGCGTTTCATTAAAGAGGAACAGCTAACGAGTCATTTGTCAAAACATGATCGAACGTtcaagaaaaacaaagaaacggACAGCTCGAAAAGATTTCTTTGCGAAATCTGTTCAAAGAGTTTTACGCAATCGACGACTCTGATCGCACATCTTAGGGCGCATAATGGCATAAAACCATACGTTTGCGAGGTTTGTTCGCGACCGTTCACGACCAACGCTTACTTGAAAATGCACATGAGAACGCATACGCAAGAACGGCCGTATATTTGTCAATACTGTTCGCGAGCATTTGCTAGAGCTGATACGCTCGCCAATCATCTGACTTCCCACACAGGTGAGGCCAAGTATCATTGTAAATACTGTCCAAAAAATTTCCGTCGTTTGAAATCGCTGAAGGAGCACGTTTTTATTCACACTGGTCAAAGACCGTATGCCTGCCCAACCTGTGATCGACGGTTTAACAACAATGGAAGTCGATACGCTCATAGTAAAAGGTGTAAACAAACTTTTGTGCAAAATCAGAATCGTGCTCAAGCATTGTCGGCGCAAGTACAAACTCAACAAACTCCACAAACTCAACAAACAAGAGTGCTGCAACAAACCACTCTTGAACAAGGGCAAATAATAAAGCCGCAGAACATTAAAACTATTACCATCACTAAACAACCTGAATCAGTCACCACTCAACAAACGGTTATGCAACTTCAGGAGATATTAATGCCTTTGATCCTTCCTCTTACGGTCACCCTTACTGACGTCGGTGAAGAAGTAATATTACCAGAGGGAACCAAAATATTTACTACGTCGTAA
Protein Sequence: MEEVIDQTIATEQTSEECLSHEEEDIKVIIPINEGMLKHESQDNECLENITTVEHDYILQQECVLSNANEQEQEQQQHHHHYQHQHQHQLTSGETFQREDYTEYVNLLVKAADATVKQDEAKDEEGKLDITNTDVQPEADSQYQNETRRSKRKLVRRTCETKRDSDEENYFENLNLSSRLKKDQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKRTPDTPQKDSYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEDSMPLEISFHEDEHSLDLDDYKDTRRNLNTEYRKKVKQKEMGQEDHEEEEQGIKGCNDAGDGDGDGDGDGDGRGRGRGRGRGRGSGGREGNNNNNNNDDDDDVNDDTDDDDEYDDCENGKRLGNSNRKEEQESRTVRAETFACDKCTKKFFTKRNLRKHAISHTLFNCSICEDEFDSLEKLRNHRAKHVVEGVLTEQELEMDKEYAIKKETLGYETGNKESAENDDGMKDESVAALLEIENNSSKKHDRNAEIHRHSGINHGCKMCCQQFATKEMLQKHMEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDEEEESNDRINRVNSTDGNYTRNKREISSQKRHNYKKELECASCNKRCSSKQSLTKHMEQHVKDEQRVMNKSERQKQSAEKKEWQKDYTNEKIYQKENRDDDYDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTSHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQALSAQVQTQQTPQTQQTRVLQQTTLEQGQIIKPQNIKTITITKQPESVTTQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00983724;
80% Identity: -