Basic Information

Insect: Melipona beecheii
Gene Symbol: -
Assembly: GCA_032399605.1
Location: JAUCMO010000504.1:12648320-12652105[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.16 13 6.6 2.3 1 23 194 216 194 216 0.94

2 18 0.00038 0.031 14.9 1.4 2 23 251 272 250 272 0.98

3 18 8.4e-05 0.0069 16.9 2.9 1 23 457 479 457 479 0.96

4 18 0.1 8.5 7.2 0.3 2 23 483 504 482 504 0.95

5 18 0.08 6.6 7.5 5.2 1 23 576 599 576 599 0.94

6 18 0.00042 0.035 14.7 0.7 1 21 605 625 605 629 0.92

7 18 0.0011 0.092 13.4 3.2 2 23 708 729 707 729 0.95

8 18 0.00022 0.018 15.6 4.2 1 23 785 807 785 807 0.96

9 18 0.00028 0.023 15.3 0.7 1 20 812 831 812 833 0.94

10 18 0.048 3.9 8.2 0.6 2 23 844 865 844 865 0.97

11 18 2.9e-05 0.0023 18.4 0.6 2 23 904 925 903 925 0.97

12 18 2.6e-05 0.0021 18.5 1.6 1 23 930 952 930 952 0.95

13 18 0.00021 0.017 15.7 2.9 1 23 958 980 958 980 0.98

14 18 4.6e-06 0.00038 20.9 0.4 1 23 996 1018 996 1018 0.95

15 18 3.7e-07 3.1e-05 24.3 0.6 1 23 1024 1046 1024 1046 0.99

16 18 4.1e-05 0.0033 17.9 0.2 1 23 1052 1074 1052 1074 0.97

17 18 0.00015 0.012 16.1 4.1 1 23 1080 1102 1080 1102 0.96

18 18 0.0098 0.8 10.4 0.3 1 20 1108 1127 1108 1129 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.16	13	6.6	2.3	1	23	194	216	194	216	0.94
2	18	0.00038	0.031	14.9	1.4	2	23	251	272	250	272	0.98
3	18	8.4e-05	0.0069	16.9	2.9	1	23	457	479	457	479	0.96
4	18	0.1	8.5	7.2	0.3	2	23	483	504	482	504	0.95
5	18	0.08	6.6	7.5	5.2	1	23	576	599	576	599	0.94
6	18	0.00042	0.035	14.7	0.7	1	21	605	625	605	629	0.92
7	18	0.0011	0.092	13.4	3.2	2	23	708	729	707	729	0.95
8	18	0.00022	0.018	15.6	4.2	1	23	785	807	785	807	0.96
9	18	0.00028	0.023	15.3	0.7	1	20	812	831	812	833	0.94
10	18	0.048	3.9	8.2	0.6	2	23	844	865	844	865	0.97
11	18	2.9e-05	0.0023	18.4	0.6	2	23	904	925	903	925	0.97
12	18	2.6e-05	0.0021	18.5	1.6	1	23	930	952	930	952	0.95
13	18	0.00021	0.017	15.7	2.9	1	23	958	980	958	980	0.98
14	18	4.6e-06	0.00038	20.9	0.4	1	23	996	1018	996	1018	0.95
15	18	3.7e-07	3.1e-05	24.3	0.6	1	23	1024	1046	1024	1046	0.99
16	18	4.1e-05	0.0033	17.9	0.2	1	23	1052	1074	1052	1074	0.97
17	18	0.00015	0.012	16.1	4.1	1	23	1080	1102	1080	1102	0.96
18	18	0.0098	0.8	10.4	0.3	1	20	1108	1127	1108	1129	0.89

Sequence Information

Coding Sequence: ATGGAGGAGGTAATCGATCAAACTATTGCTACAGAGCAAACATCGGAAGAGTGCCTGAGTCATGAGGAAGAAGACATTAAAGTTATCATACCCATTAACGAAGGAATGTTAAAACACGAAAGCCAGGATAACGAGTGtctcgaaaatattacaacgGTGGAGCatgattatatattacaacagGAATGTGTACTATCTAATGCAAATGAACAGGAGCAGGAACAACAACagcatcatcatcatcatcatcatcatcattatcaaCATCAACTTACCTCCggagaaacgtttcaacgCGAAGATTACACAGAGTATGTAAATCTTTTGGTAAAAGCAGCGGATGCGACTATAAAACAGGACGAAGCGAAAGATGAAGAAGGAAAATTGGATATTACGAACACGGATGTTCAGCCAGAAGCAGATTCTCAGtatcaaaatgaaacgagaagaaGCAAACGTAAATTAGTTCGACGAACCTGTGAGACGAAGCGAGATTCTGACGaagaaaattactttgaaaatttgaatctaAGCTCGAGATTGAAGAAAGACCAATCCTCCGATCAGtcagagaaaatttttctatgttATCTGTGCGACAAAGAGTTCTTGTCAAAGAACGTTTTGAAGGAACATATGCATTCGCATGAAGAAGTTCGAAAGGTATTGTCTCTGAAAAGAACACCAGATACGCCACAAAAAGACAATTACAATGTTGCAAAGTCACCTCCGTCGGGTAAAAGATCAAACAAATGCCCATATTGTGGTaaacagtatatatatataacctCGTTTAGTAAACATTTGAAgaaacacgagagagagaaagaggagggaaaagaagatTCGATGCCCCTGGAAATATCATTCCACGAGGATGAACATAGTTTAGATCTTGATGATTACAAAGATACACGTCGAAATTTGAATACCGAGTATCGGAAGAAAGTCAAACAAAAAGAGGTGGGCCAAGAGGACCATGGAGAGGAAGACCAAGGGATAAAAGGTTGCAATGACGGTGGTGATGGCGATAGCGATGGCGATAGCGATagcgatggcgatggcgatggcgatggcgatggcgatggtGATGGTGGCGGAGGTGGCGGCGGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGGAGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGAAGTgaaggaagagaaggaaacaacaataacaacaacaatgatGATGACGTCAACGATGACaccgatgacgacgacgaataCGACGACTGTGAGAACGGCAAACGACTAGGTAATTCGAATAGAAAGGAGCAACAGGAAAGTCGCACTGTTCGTGCAGAAACATTTGCATGCGATAAGtgtacaaagaaattttttacgaaacgtAACTTGCGAAAGCACGCCATTTCGCATACTCTTCTCAACTGTAGCATATGCGAGGACGAATTCGATTCACTggagaaattaagaaatcatCGTGCGAAACATGTGGTTGAAGGTGTATTAACCGAGCAAGAGCTCGAGATGGACAAAGAATATGCGATCAAGAAGGAAACTCTTGGGCATGAGACAGGGAATAAAGAAAGCGCAGAAAACGACGATGGGATGAATGACGAACCAGTGGTAGGGTTGTTAGAGATAGAGAATTCGTCAAAGAAAAACGATAGAAATGCAGAGATTCATCGTCATTCGGGGATCAATCACAGCTGTAAGATGTGTTGCCAGCAATTCGCAACGAAGGAAATGTTGCAAAAACATATGGAACAACAACACGAACGTGTGAAAACTTACAAGTGTACGCAATGTAACAAGACATTCGGTAATGAACTTACTTTACGTAATCATCTTATAGCCACTAATCATAAAACTTTCCTTCATGGGCAAGAATATGATCCTAATAAACGGATTAAAAGAGTCGCTGCGAGAGCCGCgcaaaaaattatcgataagaTTAAAACAGAAGATGGTTTGGAAGACTAtgacgaagaagaggagaatAACGATAGAATTAATCGCATTAATTCTACGGATGGTAATTACATTCGGAATAAGCGAGAAATTTCTTCGCAGAAAAGGCATAATTACAAGAAAGAATTGGAATGTGCGAGTTGCAACAAAAGATGCAGTTCAAAGCAGTCGTTGACGAAACATATGGAGCAACATGTAAAAGATGAACAACGAGTGATCAAgtcagaaaaacaaaaacaatcggcggagaagaaagaatggCAAAAAGACTATACCAACGAGAAGATCTATCAGAAAGAGAATAGAGATGACGATTACGATTCGGATTTCGAAAGTGGTTTGGATTGGCCGATGGATAATCACGAGTGCGCAAAGTGCAAAAAACGATACAGCACGAAAAAGTCGTTGTTACGTCATCAATTGTTGCACGAAGAGCCAAATTTCGAGTGTGATATTTGCAATGTCAAGTTTTACCGGAAAGACAAATTGAAAGCTCATTATGATAAGTGTTCGGAGAAGAATCCCGATCAAGTGAGAAAGTGCAACATCTGCGGAGATACGTTTGAGAACAACGAGATTCTACGAGAACACAGATCAAAGCATGTTACCGAGGGTATTCTTACGGAGGAAGACTTGAGGGATATCGAGCCGCGACCCGAGGAAAAGAAGCCGGGCGAAAAAATTGGTAGAAAGAGAAGGACTGATATCGTGGGTTTGGAGTGTACGGAATGTAACAAGCAATACACATCGAGAAAAGGGCTTTTACGACACATTCAAGTCCACGAAGGGAAAAAATACCTGTGCGACATATGcccgaaaaaattttacagaaggGAGCATTTAAAGATACATGTAGCCAAACATAATATGATCAAACCGTATAAGTGTACACGATGCACAAAGCGTTTCATTAAAGAGGAACAGCTAACGAGTCATTTGTCAAAACATGATCGAACGttcaagaaaaacaaagaaacggaCAGCTCGAAAAGATTTCTTTGCGAAATCTGTTCAAAGAGTTTTACGCAATCGACGACTCTGATCGCACATCTTAGGGCGCATAATGGCATAAAACCATACGTTTGCGAGGTTTGTTCGCGACCGTTCACGACCAACGCTTACTTGAAAATGCACATGAGAACGCATACGCAAGAACGACCGTATATTTGTCAATACTGTTCGCGAGCATTTGCTAGAGCTGATACGCTCGCCAATCATCTGACTTCCCACACAGGTGAGGCCAAGTATCATTGTAAATACTGTCCAAAAAATTTCCGTCGTTTGAAATCGCTGAAGGAGCACGTTTTTATTCACACTGGTCAAAGACCCTATGCCTGCCCAACCTGTGATCGACGGTTTAACAACAATGGAAGTCGATACGCTCATAGTAAAAGGTGTAAACAAACTTTTGTGCAAAATCAGAATCGTGCTCAAGCGTTGTCGGCGCAAGTACAAACTCAACAAACTCCACAAACTCAACAAACAAGAGTGTTGCAACAAACCACTCTTGAACAAGGGCAAATAGTAAAACCACAGAACATTAAAACTATTACCATCACTAAACAACCTGAATCAGTCACCACTCAACAAACGGTTATGCAACTTCAGGAGATATTAATGCCTTTGATCCTTCCTCTTACGGTCACCCTTACTGACGTCGGTGAAGAAGTAATATTACCAGAGGGAACCAAAATATTTACTACGTCATAA
Protein Sequence: MEEVIDQTIATEQTSEECLSHEEEDIKVIIPINEGMLKHESQDNECLENITTVEHDYILQQECVLSNANEQEQEQQQHHHHHHHHHYQHQLTSGETFQREDYTEYVNLLVKAADATIKQDEAKDEEGKLDITNTDVQPEADSQYQNETRRSKRKLVRRTCETKRDSDEENYFENLNLSSRLKKDQSSDQSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLKRTPDTPQKDNYNVAKSPPSGKRSNKCPYCGKQYIYITSFSKHLKKHEREKEEGKEDSMPLEISFHEDEHSLDLDDYKDTRRNLNTEYRKKVKQKEVGQEDHGEEDQGIKGCNDGGDGDSDGDSDSDGDGDGDGDGDGDGGGGGGGGRGRGRGRGRGRGRGRGRGRGRGRGRGRGRGSEGREGNNNNNNNDDDVNDDTDDDDEYDDCENGKRLGNSNRKEQQESRTVRAETFACDKCTKKFFTKRNLRKHAISHTLLNCSICEDEFDSLEKLRNHRAKHVVEGVLTEQELEMDKEYAIKKETLGHETGNKESAENDDGMNDEPVVGLLEIENSSKKNDRNAEIHRHSGINHSCKMCCQQFATKEMLQKHMEQQHERVKTYKCTQCNKTFGNELTLRNHLIATNHKTFLHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDEEEENNDRINRINSTDGNYIRNKREISSQKRHNYKKELECASCNKRCSSKQSLTKHMEQHVKDEQRVIKSEKQKQSAEKKEWQKDYTNEKIYQKENRDDDYDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRSKHVTEGILTEEDLRDIEPRPEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTSHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFVQNQNRAQALSAQVQTQQTPQTQQTRVLQQTTLEQGQIVKPQNIKTITITKQPESVTTQQTVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215850;
90% Identity: iTF_00983724;
80% Identity: -