Tger012787.1
Basic Information
- Insect
- Torymus geranii
- Gene Symbol
- -
- Assembly
- GCA_900474355.1
- Location
- UCWB01000632.1:16725-18146[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.7e-12 1.2e-08 35.4 0.0 2 35 60 94 59 100 0.91
Sequence Information
- Coding Sequence
- atGTATGGTGAGAAAAAGCGGGGTTGGGATTGTTTTGTTTGGTCAGGGCTTTGGAGAATAGGCCGTTATTGTATGGCCAAGTTGTTGGAATCGTCCCACGCTTGGCTCGGAGCCTCCACCTCCAGTATAGCAGCTGACTACTCGGCGATGATGAAGGTGAAGGCGCCGACGTGGTCGCGGCAAGAGCTGCAGGAGGCGATCGAGGCGGTGGTCACGCAGAAGATGCGCTTCACCCAGGCCTCGAGCAAGTACGGCATACCCAAAGGCACGCTCTACGACAACATCCTCGGCAAGTCCAAGAGGATGATGGTGCTGGAGGAGGCAGGCTTGGATCAGCCGGAGGAGCAGGCCGTGCTCGAGTTCTGCTGCGACATCAGCGTCAGCCCGTACAATCGGCGCACCAAGAAATCCCTCAACGCGATACTCAGCTACGTGGAGAAGCTGAGGCGACAGCGCGATCCCAGCTTCAGCTTCAACGGCCTCTCGGGGTTTAGGTGGTGGTGGGCGTTCTGCAAGAAGCACGGCATCGTGTCGCTGTACTTCAACGACGAGAACGATAACGAATGA
- Protein Sequence
- MYGEKKRGWDCFVWSGLWRIGRYCMAKLLESSHAWLGASTSSIAADYSAMMKVKAPTWSRQELQEAIEAVVTQKMRFTQASSKYGIPKGTLYDNILGKSKRMMVLEEAGLDQPEEQAVLEFCCDISVSPYNRRTKKSLNAILSYVEKLRRQRDPSFSFNGLSGFRWWWAFCKKHGIVSLYFNDENDNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00969493;
- 90% Identity
- iTF_01467873; iTF_01469579; iTF_01468748; iTF_01466101; iTF_01110027;
- 80% Identity
- iTF_01466101;