Mrot004984.1
Basic Information
- Insect
- Megachile rotundata
- Gene Symbol
- -
- Assembly
- GCA_000220905.1
- Location
- NW:4116661-4122252[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.012 0.71 9.7 2.4 1 23 377 399 377 399 0.95 2 18 0.00057 0.035 13.8 0.9 2 23 440 461 439 461 0.98 3 18 0.0028 0.17 11.6 2.2 1 23 572 594 572 594 0.93 4 18 0.0034 0.21 11.3 0.4 2 23 598 619 597 619 0.96 5 18 0.019 1.2 9.0 6.2 1 23 689 711 689 712 0.95 6 18 0.00028 0.017 14.7 0.6 1 21 718 738 718 742 0.92 7 18 0.018 1.1 9.0 5.0 2 23 824 845 823 845 0.95 8 18 0.00017 0.01 15.4 4.2 1 23 899 921 899 921 0.96 9 18 0.00021 0.013 15.1 0.7 1 20 926 945 926 947 0.94 10 18 0.031 1.9 8.3 0.5 2 23 958 979 958 979 0.97 11 18 9.7e-06 0.0006 19.3 0.7 2 23 1018 1039 1017 1039 0.97 12 18 2e-05 0.0012 18.4 1.6 1 23 1044 1066 1044 1066 0.95 13 18 0.00011 0.0067 16.0 2.9 1 23 1072 1094 1072 1094 0.98 14 18 3.5e-06 0.00021 20.7 0.4 1 23 1110 1132 1110 1132 0.95 15 18 2.8e-07 1.7e-05 24.2 0.6 1 23 1138 1160 1138 1160 0.99 16 18 3.1e-05 0.0019 17.8 0.2 1 23 1166 1188 1166 1188 0.97 17 18 0.00011 0.007 16.0 4.1 1 23 1194 1216 1194 1216 0.96 18 18 0.008 0.49 10.2 0.4 1 20 1222 1241 1222 1243 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAATAAATACATCGGATTCACCGCAAAACGAAGAAGGCATCGTGTCGACGGTAGAAATATGCCGTGTTTGCCTTCTTGGTAATCTAGTAATGCGAGACTTGTTTCTGGAAAACGAGGTTGCTTCTCTTTCGGCAAAAGCGATGAGTTTCGCTAACGTTAAGATGTTACCCGGAGATGGTTTACCAGCTCGCGTATGCTGCGTGTGCGCGGACAAACTGGAATCCGCATacgaatttaaattacaagtgGAACAAGCGGATACCGTGCTCAGAGAAAGATTTGTCACTATGAATATAAAGGAAGAGCTGTTCTTCGATGAAGTCGAAGTACACTTGGATACCAGAGAACGAAACGAGGGTATAGAAGGAATGCGTATAGAGAATCATTATCGGGATACTACGGAAACTTTACCACCAATGTCTCAGGAAGAGAAATCGTCTCTACTGAAGGATCAGCTGGATCTGTTACAAATGGAAAAACTAACCGAAAATGAAGAGGGTATTAGAGAGCAGAACAATGGCCAAGTAATGGAAGAAGTGATTGATCAAGCGATTAGCACGGAACAGACATCGGAGGATCGTCTAAACCAGGAAGAAGAGACCGTTAAAACTGTCGCGGATACCTCGAAAGACGACGAATCATTGAAACATGAAAGCAGGGAGGACGATTGCATCGGAAGGATTGCGCCGATGGAACACGATTATATATTGCAACAGGAGTGTATATTGTCCGACGACGGTCAGCGAGAACatcaagaagaagaagaacaacCTCAAGAACAGCAGCAGCTTAACGATTCCGAAGAATCGTTTCCGCGAGAAGATTGCGcggaatatgtaaatttattggTAAAGGCGGCCGATGTAACGAATCAGGAAGACGAAGACGAGGACGAGGATGAACCCGGAGGTGCGGACGATATGAAACCGGATGTAAAAATGGAAGAAGGGTCTCCGTGTCAGAACGAAGCTAGGAGAAGTAAACGTAAGCTGGTCCGTCGAAACCAAAGTATAGACACGAAACGAGACTCCgacgaagaaaattatttcgaaaatctaaatttaagttcgagattaaaaaatgtcgaagATTCCGATAAATCCGATAAGATATTTTTCCTATGTTACCTGTGCGACAAAGAGTTTTTGTCAAAGAGCGTTTTGAAGGAGCATATGCACACTCACGAGGAAGTTAGAAAAGCATTGTCCCTAAAAAAGACGTTAGAGACATTAGAAACGTTAGAAACGCCGCAAAAAAATGTTAGTAATCCCGTGAAATCGCCGCCGTCGGGTAAAAGATCGAATAAATGCCCTTACTGTGGCAAACAGTACATCTATATAATTTCGTTTAGTAAGCACTTGAAGAAACACGAACGGGAGAAGGAAGAGGGAAAGGAAGAGCCGATGCCGTTAGAAATTTCGTTTCACGAGGACGAGCATAGTTTGGATCTTGACGATTACGAGGAGGCGCAGCGTTCGAATGCCGAGTTTCGAAGAAGAGCCAAAGGAAAAGACGGTTTCGACAGAACGAAGACGAAGAAACCGGTAGAAGAAGGCGAGTTCGAGGACGAGGACGAGGAACAAGGGCAGGAGGAGAATGAAGAGGAAGAAAGGGGGAAGGAAGAGAATAGGGGTGATCAAGGAGACGACGGTTGGAAcagagaagagaaagaaggaagTCAGGGTGCGCGCACGGAAACGTTCGCCTGCGATAAATGCTCGCAGAAATTCTATACCAAGCGCGGTTTACGGAAACACTCGGTTTCGCACGTTGTTCTTAAATGTAGCGTTTGCGAAGAAGAATTCGATTCGATGGAAAAGCTTAGAAACCATCGTGCAAAGCACGTGGTCGAAGGCGTATTGAGCGAACAAGATTTCGAAGCGGATACGGAGTACACGATCGACGATAGAACCGACGATCGCGGAACAGACGGGAAAGGAAACGATGGAAAGGCCCAAAATGGAGAGGATGGGGGCGAAGTGGAACGATTTGAAACGGATAACAGATCGGGGAAGAGCGACAGAAATACGGAGACGCACTCAGGGATCGAGTACAATTGCAAGACGTGTTGTCAGCGGTTTCCGAGGAAAGATTCGTTGCTGAAGCACATGGAACAGCATCACGAACGCGCGAAAACTTACAAGTGTACACAATGTAATAAAACGTTCGGCAACGAACTTACTTTACGAAATCATCTTATAGCCACCGATCATAAAACTTTCGTTCACGGGCAAGAATACGATCCTAATAAACGCATTAAACGAGTCGCCGCGAGAGCGGCTCAGAAGATAATCGATCAGATTAAAACGGAGGACGGTTTTTTAGAGGATtacgacgacgatgacgacgaGGACGATCAGAGCAACGTCAGGCTCGATCGCGTCGGTTCAGGGTTAGACGGTCGCGGTAAACGAGACACGTCCATGCAAAAGAAACACAATTACAAGAAGGAGCTGGAATGCGTgagttgcaataaaaaatgctGTTCGAAGCAGTCGTTGGCAAAACACATGGAACAGCACGTGAAAGACGAACGAAccgtgaaattggaaaagcaGAAACAACCGGCGGAGAAAAAGGGACAACGGAACTGTACCGGCGAACGCGTCGATAACGGGGAGAACAAAGATGACGATTACGACTCGGATTTCGAGAGTGGGTTAGACTGGCCGATGGACAATCACGAGTGTGCCAAGTGTAAGAAACGGTACAGTACGAAAAAATCATTGTTGCGACATCAGTTATTGCACGAGGAGCCGAACTTCGAATGCGACATCTGTAACGTGAAATTCTACCGTAAAGACAAATTGAAGGCTCATTACGACAAGTGTTCGGAGAAGAATCCTGATCAAGTGAGAAAGTGCAACATCTGCGGAGATAGTTTCGAAAACAACGAAATCCTACGGGAGCACAGATCGAAACACGTTACCGAGGGTATCCTTACGGAGGAAGATTTGAGGGATACAGAACCGCGGCCGGAAGAGAAAAAACCGGGCGAGAAAATCGGTCGGAAGAGAAGAACCGACATCGTCGGTTTAGAATGCACCGAATGCAACAAACGATACACCTCGAGGAAAGGACTATTACGACATATTCAAGTACACGAGGGAAAGAAATACCTGTGCGATATATGTCCGAAAAAGTTTTACAGGAGAGAACATTTGAAGATACACGTGGCTAAGCATAATATGATAAAACCGTACAAGTGTACTCGTTGCACCAAGCGTTTCATTAAAGAGGAGCAATTGACCAATCATCTGTCGAAGCATGATCGTACTTTCAAGAAGAATAAAGAGACGGATAGTTCGAAGAGGTTCCTTTGCGAGATCTGTTCGAAAAGTTTCACCCAATCGACCACGTTAATCGCTCATCTTCGAGCGCACAACGGGATCAAACCGTACGTTTGCGAAGTTTGTTCGCGACCGTTTACAACGAACGCGTACCTAAAAATGCATATGAGAACGCATACGCAAGAACGGCCGTATATCTGTCAGTACTGTTCACGAGCATTCGCCAGGGCCGACACGCTCGCCAATCATTTGACTTCGCACACGGGCGAAGCGAAGTATCATTGCAAATATTGTCCGAAAAATTTCCGCCGTCTCAAGTCCCTGAAAGAGCACGTATTCATTCACACCGGTCAGAGGCCTTACGCTTGTCCAACCTGTGATCGACGGTTCAACAACAACGGAAGTCGTTACGCTCACAGTAAAAggtgtaaacaaaatttcgttCAAAATCAGACTCAAAACCAAAACCAGAATCAGAATCGTGGTCAGATATTGGCCACGCAAGCGCAATCGATACAAACTCAACAGAAAGTGTTACACCAGGCTACTCTTGGACAATGTCAAGTAGTGAAGGCACAGAATATCAAAACGATCACTATTACCAGACAATCTGAACCGGTTACTGCTCAACAGGTTATGCAACATCAGGAAATACTGATGCCTTTGATTCTTCCGCTTACCGTCACTCTCGCCGACGTTGGCGAAGAAGTTATATTACCAGAgggaagtaaaatatttactaccACTTAA
- Protein Sequence
- MDAVEINTSDSPQNEEGIVSTVEICRVCLLGNLVMRDLFLENEVASLSAKAMSFANVKMLPGDGLPARVCCVCADKLESAYEFKLQVEQADTVLRERFVTMNIKEELFFDEVEVHLDTRERNEGIEGMRIENHYRDTTETLPPMSQEEKSSLLKDQLDLLQMEKLTENEEGIREQNNGQVMEEVIDQAISTEQTSEDRLNQEEETVKTVADTSKDDESLKHESREDDCIGRIAPMEHDYILQQECILSDDGQREHQEEEEQPQEQQQLNDSEESFPREDCAEYVNLLVKAADVTNQEDEDEDEDEPGGADDMKPDVKMEEGSPCQNEARRSKRKLVRRNQSIDTKRDSDEENYFENLNLSSRLKNVEDSDKSDKIFFLCYLCDKEFLSKSVLKEHMHTHEEVRKALSLKKTLETLETLETPQKNVSNPVKSPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEREKEEGKEEPMPLEISFHEDEHSLDLDDYEEAQRSNAEFRRRAKGKDGFDRTKTKKPVEEGEFEDEDEEQGQEENEEEERGKEENRGDQGDDGWNREEKEGSQGARTETFACDKCSQKFYTKRGLRKHSVSHVVLKCSVCEEEFDSMEKLRNHRAKHVVEGVLSEQDFEADTEYTIDDRTDDRGTDGKGNDGKAQNGEDGGEVERFETDNRSGKSDRNTETHSGIEYNCKTCCQRFPRKDSLLKHMEQHHERAKTYKCTQCNKTFGNELTLRNHLIATDHKTFVHGQEYDPNKRIKRVAARAAQKIIDQIKTEDGFLEDYDDDDDEDDQSNVRLDRVGSGLDGRGKRDTSMQKKHNYKKELECVSCNKKCCSKQSLAKHMEQHVKDERTVKLEKQKQPAEKKGQRNCTGERVDNGENKDDDYDSDFESGLDWPMDNHECAKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRSKHVTEGILTEEDLRDTEPRPEEKKPGEKIGRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFVQNQTQNQNQNQNRGQILATQAQSIQTQQKVLHQATLGQCQVVKAQNIKTITITRQSEPVTAQQVMQHQEILMPLILPLTVTLADVGEEVILPEGSKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01122592;
- 90% Identity
- iTF_00962655; iTF_00964620; iTF_00961974; iTF_00963339;
- 80% Identity
- -