Basic Information

Insect: Megachile ligniseca
Gene Symbol: SCAND3
Assembly: GCA_945859565.1
Location: CAMAOB010000309.1:44229-46653[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7.5e-06 0.00078 20.1 2.4 2 23 278 299 277 299 0.97

2 15 0.017 1.8 9.5 4.1 1 23 305 328 305 328 0.96

3 15 4.3e-05 0.0044 17.7 1.9 2 23 410 431 409 431 0.97

4 15 1e-05 0.001 19.7 1.9 1 23 437 459 437 459 0.97

5 15 9.9e-05 0.01 16.6 0.5 1 23 465 487 465 487 0.95

6 15 2.5e-07 2.5e-05 24.8 0.9 1 23 502 524 502 524 0.98

7 15 4.6e-06 0.00047 20.8 0.5 1 23 530 552 530 552 0.97

8 15 8e-06 0.00082 20.0 2.3 1 23 558 580 558 580 0.98

9 15 0.00071 0.073 13.9 0.2 1 23 586 608 586 608 0.99

10 15 3.1e-06 0.00032 21.3 0.3 1 23 614 637 614 637 0.94

11 15 1.6e-05 0.0017 19.1 1.3 1 23 643 665 643 665 0.98

12 15 0.00035 0.036 14.9 4.7 1 23 671 693 671 693 0.98

13 15 5.3e-06 0.00054 20.6 0.2 1 23 699 722 699 722 0.96

14 15 3.5e-06 0.00036 21.2 0.6 1 23 728 750 728 750 0.96

15 15 3.1e-06 0.00032 21.3 4.5 1 23 756 778 756 778 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7.5e-06	0.00078	20.1	2.4	2	23	278	299	277	299	0.97
2	15	0.017	1.8	9.5	4.1	1	23	305	328	305	328	0.96
3	15	4.3e-05	0.0044	17.7	1.9	2	23	410	431	409	431	0.97
4	15	1e-05	0.001	19.7	1.9	1	23	437	459	437	459	0.97
5	15	9.9e-05	0.01	16.6	0.5	1	23	465	487	465	487	0.95
6	15	2.5e-07	2.5e-05	24.8	0.9	1	23	502	524	502	524	0.98
7	15	4.6e-06	0.00047	20.8	0.5	1	23	530	552	530	552	0.97
8	15	8e-06	0.00082	20.0	2.3	1	23	558	580	558	580	0.98
9	15	0.00071	0.073	13.9	0.2	1	23	586	608	586	608	0.99
10	15	3.1e-06	0.00032	21.3	0.3	1	23	614	637	614	637	0.94
11	15	1.6e-05	0.0017	19.1	1.3	1	23	643	665	643	665	0.98
12	15	0.00035	0.036	14.9	4.7	1	23	671	693	671	693	0.98
13	15	5.3e-06	0.00054	20.6	0.2	1	23	699	722	699	722	0.96
14	15	3.5e-06	0.00036	21.2	0.6	1	23	728	750	728	750	0.96
15	15	3.1e-06	0.00032	21.3	4.5	1	23	756	778	756	778	0.99

Sequence Information

Coding Sequence: ATGTATTCGAATTACATCACGAACAAAAGATTATATCATCGAGGACAAATTGATGTAATGGACATGCCAGTACAATTCGCTTGTAATTACAAATATTTCTTTGTTTATGAGGATCAAATATCTAGGTTTGTGGTACTAAAAGGTTTACATGGAAATACAGCAAGCGAAGTAGCTATGAAACTCTTGGATATATTAACTATTATTGGAGCACCGCAAGTGTTACAGAGTAAAAATGGGCGCTATTTCGCAGAACAAGTTGTACAAGAATTACGTTTATTGTGGAAGGATTTTATAATACTTCACGGAGAAATTTCTGAAAGCGAAGAAAACAACAGAGATTTTAAGAATTTAATTGAATGTTGGATAGAAGAAAATCCAACAAAGACATGGTACGAAGCTTTGAAACATGTACAAATTATCCAGAATTCGACGTTTCGTTGTGAAAATGGAAAAATTCCTTACGACATTTTATTTGGACGAAATGTACACGAAGAATTTCAGAAACAAATTAATACTATAGATCCAATAGAAGATATATGGGCAGAAGAAGAATGGGTTGATTTTTCATTTGATACGAAAGATGAGATCATTAAGGAAATAAAGGACGGAAATGAAAATTTAACTGAGGATTCAAGCATGATGGATGCAAATAGTTCAAGGGAATTCGACGACGACCCCTATATCGATGATATCGACGAACCCCAGAGGGACACACTTGGTTTTAATTTTGTTAACGTCAGGAGCGAACCTTTAAATATACACACTGAAGATTTAATGTTTGAGGAGGAATCGATAATGGATGATAAGATAAAGCTAGAACCTGAAGATCTAAAGTGTACAATTTGCGAAAAACAATATATGAAACCTGGTCATTTAAAGAATCATATGAGAACACATACGAAAGGAAAGATGTTTGAATGCAAACTCTGTAATAAAAAGTTTCATGTCATAAATTTGTACAAAAAGCATGTAAGGCAATCTCATACAGAAAATAAGTTACCAAGTTTGATTAGAACCAGAAGAAGTAAGGATTTACTAGACGATTCAATATTAGATGTAAAACCGGCGGTTGAATTAAACTGTTCTTCAGAATTAAATTTAAGCGATGTAGAATCTAACGTAACGGACGAATCTTCAAAAGTAACAAAAAATTCGAATCTTGCTAAAGAAAGGAAAAAGGTTCCTATAGAAAGTCGTCCATTAAAAATGAATGGGGATCCAAATCTGGAATGTTCGTTCTGTAAACAGAAATTCAATTTTCCTAGTGTACTGAAAAGACATATGCGATCTCACACAAACGAAAGGCCGTACATCTGTGACGTTTGTAATAAAAGCTTTAAACAACTGGGTCATCTTAGCCAACATTCGTTAACGCACAAGGATTATCGTTCTTTTCTCTGCACCATTTGTGGAGTAAAATTCGATACGTTGAGTTCATTAAAAGTTCACTCTCAGTCACACAAAGAAGCCTACATTTCAAAAACTAAGGAGACTTTTCGGTTATTCGAGTGTGATAATTGTAAGAAGGTGTTCACCACTAAAAGCGTATTAGAGCGACACATACTTACACATTCTCACGAACGTCAGTTTGCCTGCGTGGTTtgtgggaaaagattcaaacaagcaggacacgtgaaatctcatatgttggtgcatacaggtgaacgaaagttcgaatgcacggtatgcaaaaagagatttagtctttccaattcccttaagaaacacatgtacgtgcacaacggagaaaaaccgtatcagtgtgacgtatgcggtgcacggttccttgaaaagagaaatttaaacggacatcttatgactcatacgaacgaGCGTCCATTTCGCTGTAAAATTTGTGGGAAACGGTATACTTTGGCAGATACTCTGCGCCGTCATATAAGTGCAGCTCACGAGGACGGTCGCACGTACCAATGCGAAATTTGTGCAAAAATGTTTAAACAGCTTGCACACTTGTCCGTTCACAAGAAAGTGCACAACGACGAGAGACCGTTccagtgtcatttatgcgagaaaaactttaaacataaaaatgtgctcaagtctcatttggctattcatgccaacgtaaggccattcgaatgcgatgtatgtaaggctacgtttgtcagaaagacaaatttacagacgcatattgcatcggctcacatgaacgaaagaccgtacgtttgtactatatgcggaaaacgatttaagcaaattagtcatttaaatggtcacgtcgtagtacacagtaatttaatgccttatcaatgtgacttttgtgaTCGACGATGTAACAGACTCGATAACTTGAAAAAGCATATGCGCCTCCATACGAAGAACAAAGAACAAATACTATAA
Protein Sequence: MYSNYITNKRLYHRGQIDVMDMPVQFACNYKYFFVYEDQISRFVVLKGLHGNTASEVAMKLLDILTIIGAPQVLQSKNGRYFAEQVVQELRLLWKDFIILHGEISESEENNRDFKNLIECWIEENPTKTWYEALKHVQIIQNSTFRCENGKIPYDILFGRNVHEEFQKQINTIDPIEDIWAEEEWVDFSFDTKDEIIKEIKDGNENLTEDSSMMDANSSREFDDDPYIDDIDEPQRDTLGFNFVNVRSEPLNIHTEDLMFEEESIMDDKIKLEPEDLKCTICEKQYMKPGHLKNHMRTHTKGKMFECKLCNKKFHVINLYKKHVRQSHTENKLPSLIRTRRSKDLLDDSILDVKPAVELNCSSELNLSDVESNVTDESSKVTKNSNLAKERKKVPIESRPLKMNGDPNLECSFCKQKFNFPSVLKRHMRSHTNERPYICDVCNKSFKQLGHLSQHSLTHKDYRSFLCTICGVKFDTLSSLKVHSQSHKEAYISKTKETFRLFECDNCKKVFTTKSVLERHILTHSHERQFACVVCGKRFKQAGHVKSHMLVHTGERKFECTVCKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKEQIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961965; iTF_00964616; iTF_00962648; iTF_00963975; iTF_01123196; iTF_01122588;
90% Identity: iTF_00962648;
80% Identity: -