Olig008793.1
Basic Information
- Insect
- Osmia lignaria
- Gene Symbol
- SCAND3
- Assembly
- GCA_012274295.1
- Location
- NW:23943-28394[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.9e-05 0.0034 16.9 5.2 2 23 271 292 270 292 0.97 2 15 0.008 0.56 10.0 2.5 2 23 299 321 298 321 0.95 3 15 2.5e-06 0.00017 21.0 2.3 2 23 394 415 393 415 0.97 4 15 1e-06 7.2e-05 22.2 2.0 1 23 421 443 421 443 0.98 5 15 2.2e-05 0.0015 18.0 1.6 1 23 449 471 449 471 0.98 6 15 1.5e-07 1.1e-05 24.8 0.9 1 23 486 508 486 508 0.98 7 15 2.9e-06 0.0002 20.8 0.5 1 23 514 536 514 536 0.97 8 15 5e-06 0.00035 20.1 2.3 1 23 542 564 542 564 0.98 9 15 0.00044 0.031 13.9 0.2 1 23 570 592 570 592 0.99 10 15 2e-06 0.00014 21.3 0.3 1 23 598 621 598 621 0.94 11 15 1e-05 0.0007 19.1 1.3 1 23 627 649 627 649 0.98 12 15 0.00022 0.015 14.9 4.7 1 23 655 677 655 677 0.98 13 15 3.3e-06 0.00023 20.6 0.2 1 23 683 706 683 706 0.96 14 15 4.2e-06 0.00029 20.3 0.6 1 23 712 734 712 734 0.97 15 15 1.9e-06 0.00014 21.3 4.5 1 23 740 762 740 762 0.99
Sequence Information
- Coding Sequence
- ATGTATTCAAATAACATCACAAACAGAAGATTATATCATAGAGGACAAATTGATGTAATAGACATGCCAGTACAATTCacatgtaattataaatatttttttgtttatgaaGATCAGATATCTAAATTTGTAGTATTAAAAGGCTTACGTGAAAATACAGCAAATGAAGTAGCTATAAAGCTCTTGGATATACTAACTATTATTGGAGCACCACAAGTTTTACAAAGTAGAAATGGACGTAATTTTGCAGAGCAAGTTGTAAAAGAATTGCGTTTATTGTGGAAGGATTTTATAATACTTCATGGAGAAATTTTagagaataaagaaaacagCAGAAATTTTAAGGATTTACTTGAAGATTGGGTACGGGATAACCCAACAAAGACATGGTATGAAGCTTTAAAACATGTACAGATTATGCAGAATTCGACGTTTCATTGTGAAAGCGGAAAAATTCCTTACGAAATATTATTTGGACGAAATGTTCACgtagaatttcaaaagcaaACTAGTACTGTagattcaaaagaaaatatatggGCAGAAGAAGAATGGTTTAATACGAAAGATGACGGTAAGAaggatggaaatgaaaacttaACTGAGGATTCAAGCATGAGGGATGCAGATAGTTCAAGGGATTTTGACAATGACTCCTACAGTGATGTTAAAGATGATCCTCAAAGAGACACTCCtggttttaattttgttaatgttAGAAGTGAATCCTTAAATATGCATACTGAAGATTCAACATTTGAGGATGAATCAGTGGCagaagataaaataaagatagaaACTCAAGATTTAAAATGTACAGTTTGTCATAAACAGTATATGAAGCCTggtcatttaaaaaatcatatgaAAACACAcataaagagaagaaagttGGAATGCAAActctgtaacaaaaaatttcatgttttaaatttatatgaaaagcATGTAAGGCAATCTCATAAActcaaattattcaatttgagTAGAACCAGAAGGAGTAAGGATTTACAAGACGATTCGATGTTAGATGCAAAAGCGCCTGAATCAAAGTGTTTTTCGGATGGAACTTTGAGCGATACAGAATCCAATGTAACTGATAAATCTCCGAAAACAacaaaagaaaggaaaaagtcCCTAGAGAATAGGCCATTAAAAATGAACGGAGACCCAGGTCTGAAATGTACATATTGcaatcaaaaatttaattttcctagtGTACTGAAAAGACACATGCGATCTCACACAAACGAAAGACCGTATATAtgtgaaatttgtaataaaagttttaaacaaTTGGGTCACCTTAGTCAGCATACATTAACGCACAAGGATTATCGTTCTTTCCACTGTACAGTTTGCGGGGTACAATTCGAGACGTTGAGCTCGTTAAAAGTCCACACTCAAACACACAAGGAAGACTATGTTTCAAAAACTAAAGAGCATTTTCGTTTATTCGAATGCGATAATTGTAAGAAAGTGTTCACTACTAAAAGTGTTTTGGAGAGGCACATACTTACCCATTCCCAAGAACGTCAATTTGCCTGTGTAGTTTGTGGAAAAAGATTCAAACAGGCAGGACACGTGAAGTCTCATATGTTGGTGCATACAGGTGAACGAAAGTTTGAATGCACTGTATGCAAAAAGAGATTCAGTCTTTCGAATTCTCTTAAGAaacatatgtacgtacataatGGGGAGAAGCCATATCAGTGCGACGTGTGCGGTGCACGGTTCCTCGAGAAGAGAAATCTAAATGGGCATCTAATGACTCACACGAACGAGCGTCCGTTTCGCTGTAAAATTTGTGGAAAACGGTATACTTTGGCGGATACTCTGCGTCGCCATATAAGCGCAGCTCATGAAGATGGCCGCACGTATCAGTGTGAAATTTgtgcaaaaatgtttaagCAACTTGCTCATTTATCTGTTCACAAAAAGGTTCACAATGATGAGCGACCATTCCAGTGTCATTTGTGCGAGAAAAACTTCAAGCATAAAAATGTGCTTAAATCTCACTTGGCCATACATGCTAATGTCAGGCCATTTGAATGTGATGTGTGTAAGGCTACGTTTGTAAGAAAGACGAATTTACAAACGCATATCGCATCAGCTCATATGAACGAGAGACCGTATGTTTGTAATATATGCGAAAAACGATTCAAACAAATTAGTCATTTAAATGGTCACATTGTAGTACACAGTAATTTAATGCCTTATCAATGTGATTTCTGTGATCGGCGATGTAATAGATtggataatttgaaaaagcaTATGCGTCTTCATACGAAGAACAAAGAACAAATAGTATAA
- Protein Sequence
- MYSNNITNRRLYHRGQIDVIDMPVQFTCNYKYFFVYEDQISKFVVLKGLRENTANEVAIKLLDILTIIGAPQVLQSRNGRNFAEQVVKELRLLWKDFIILHGEILENKENSRNFKDLLEDWVRDNPTKTWYEALKHVQIMQNSTFHCESGKIPYEILFGRNVHVEFQKQTSTVDSKENIWAEEEWFNTKDDGKKDGNENLTEDSSMRDADSSRDFDNDSYSDVKDDPQRDTPGFNFVNVRSESLNMHTEDSTFEDESVAEDKIKIETQDLKCTVCHKQYMKPGHLKNHMKTHIKRRKLECKLCNKKFHVLNLYEKHVRQSHKLKLFNLSRTRRSKDLQDDSMLDAKAPESKCFSDGTLSDTESNVTDKSPKTTKERKKSLENRPLKMNGDPGLKCTYCNQKFNFPSVLKRHMRSHTNERPYICEICNKSFKQLGHLSQHTLTHKDYRSFHCTVCGVQFETLSSLKVHTQTHKEDYVSKTKEHFRLFECDNCKKVFTTKSVLERHILTHSQERQFACVVCGKRFKQAGHVKSHMLVHTGERKFECTVCKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCNICEKRFKQISHLNGHIVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKEQIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00963333;
- 90% Identity
- iTF_01122588;
- 80% Identity
- -