Obic007904.1
Basic Information
- Insect
- Osmia bicornis
- Gene Symbol
- -
- Assembly
- GCA_907164935.1
- Location
- NC:1507408-1512263[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.2e-05 0.0038 18.0 3.1 2 23 271 292 270 292 0.97 2 15 0.022 1.4 10.0 2.5 2 23 299 321 298 321 0.95 3 15 6.9e-06 0.00042 21.0 2.3 2 23 395 416 394 416 0.97 4 15 2.9e-06 0.00018 22.2 2.0 1 23 422 444 422 444 0.98 5 15 6.1e-05 0.0038 18.0 1.6 1 23 450 472 450 472 0.98 6 15 4.3e-07 2.7e-05 24.8 0.9 1 23 487 509 487 509 0.98 7 15 8e-06 0.00049 20.8 0.5 1 23 515 537 515 537 0.97 8 15 1.4e-05 0.00086 20.0 2.3 1 23 543 565 543 565 0.98 9 15 0.0012 0.076 13.9 0.2 1 23 571 593 571 593 0.99 10 15 5.5e-06 0.00034 21.3 0.3 1 23 599 622 599 622 0.94 11 15 2.8e-05 0.0017 19.1 1.3 1 23 628 650 628 650 0.98 12 15 0.00061 0.038 14.9 4.7 1 23 656 678 656 678 0.98 13 15 9.2e-06 0.00056 20.6 0.2 1 23 684 707 684 707 0.96 14 15 1.2e-05 0.00072 20.3 0.6 1 23 713 735 713 735 0.97 15 15 5.4e-06 0.00033 21.3 4.5 1 23 741 763 741 763 0.99
Sequence Information
- Coding Sequence
- ATGTATTCAAATAACATCACGAACAGAAGATTATATCATAGAGGACAAATTGATGTAATAGATATGCCAGTACAATTCAcatgtaattataaatatttttttgtttatgaAGATCAAATATCTAAATTTGTAGTATTAAAAGGCTTACGTgaaaatacagcaaatgaagTAGCTATAAAGCTCATGGATATATTAACTATTATTGGAGCACCGCAAGTTTTACAAAGTAGAAATGGACGTAATTTTGCAGAGCAAGTTGTAAAAGAATTGCGTTTATTGTGGAAGGATTTTATAATACTTCATGGAGAAATTTTagagaataaagaaaacagCAGAAATTTTAAGGATTTACTTGAAGATTGGGTACGGGATAACCCAACAAAGACATGGTACGAAGCTTTAAAACATGTACAGATTATGCAGAATTCGACGTTTCATTGTGAAAGCGGAAAAATTccttatgaaatattatttggACGAAATGTTCACGTAGAATTTCAAAAGCAAACTAGTACTGTAgattcaaaagaaaatatatggGCAGAAGAAGAATGGTTTAATACGAAAGATGACGGTAAGAAGGATGGAAATGAAAACTTAACTGAGGATTCAAGCATGAGGGATGCAGATAGTtcAAGGGATTTTGACAATGACTCCTACAGTGATGTTAAAGATGATCCTCAAAGAGACACTCCTggttttaattttgttaatgttAGAAGTGAATCCTTAAATATGCATACTGAAGATTCAACATTTGAGGATGAATCAGTGGcagaagataaaataaagataGAAACTCAAGATTTAAAATGTACAGTTTGTCAGAAACAGTATATGAAGCCTGgtcatttaaaaaatcatatgAAAACACACATAAAGAGAAGAAAGTTGGAATGCAAACtctgtaacaaaaaatttcatgttttaaatttatatgaaaaacATGTAAGGCAATCTCACAAACTCAAATTATTCAATTTGAGTAGAACCAGAAGGAGTAAGGATTTACAAGACGATTCGATGTTAGATGAAAAACCGCCTGAATCAAAGTGTTTTTCGGATGGAACTTTGAGCGATACAGAATCCAATGTAACTGATAAATCTCCGAAAACaacaaaagaaaggaaaaaggtCCCTACAGAGAATCGGCCATTAAAAATGAACGGAGACCCAGGTCTGAAATGTACATATTGtaatcaaaaatttaattttcctagTGTACTGAAAAGACACATGCGATCTCACACAAACGAAAGACCGTATATATGtgaaatttgtaataaaagtttTAAACAATTGGGTCACCTTAGTCAGCATACATTAACGCACAAGGATTATCGTTCTTTCCACTGTACAGTTTGCGGGGTACAATTCGAGACGTTGAGCTCGTTAAAAGTCCACACTCAAACACACAAGGAAGACTATGTTTCAAAAACTAAAGAGCATTTTCGTTTATTCGAATGCGATAATTGTAAGAAAGTGTTCACTACTAAAAGTGTTTTGGAGAGGCACATACTTACCCATTCCCAAGAACGTCAATTCGCTTGTGTAGTTTGTGGAAAAAGATTCAAACAGGCAGGACACGTGAAGTCTCATATGTTGGTGCATACAGGTGAACGAAAGTTTGAATGCACTGTATGCAAAAAGAGATTCAGTCTTTCGAATTCTCTTAAGAAACATATGTACGTACATAATGGGGAGAAGCCATATCAGTGCGACGTGTGCGGTGCACGGTTCCTCGAGAAGAGAAATCTAAATGGGCATCTAATGACTCACACGAACGAGCGTCCGTTTCGCTGTAAAATTTGTGGAAAACGGTATACTTTGGCGGATACTCTGCGTCGCCATATAAGTGCAGCTCATGAAGATGGCCGCACGTATCAGTGTGAAATTTGTGCAAAAATGTTTAAGCAACTTGCTCATTTATCTGTTCACAAAAAGGTTCACAATGATGAGCGACCATTCCAGTGTCATTTGTGCGAGAAAAACTTCAAGCATAAAAATGTGCTTAAATCTCACTTGGCCATACATGCTAATGTCAGGCCATTTGAATGTGATGTGTGTAAGGCTACGTTTGTAAGAAAGACGAATTTACAAACGCATATCGCATCAGCTCATATGAACGAGAGACCGTATGTTTGTAATATATGCGAAAAACGATTCAAACAAATTAGTCATTTAAATGGTCACATTGTAGTACACAGTAATTTAATGCCTTATCAATGTGATTTCTGTGATCGGCGATGTAATAGACTGGATAATTTGAAAAAGCATATGCGTCTTCATACGAAGAACAAAGAACAAATAGTATAA
- Protein Sequence
- MYSNNITNRRLYHRGQIDVIDMPVQFTCNYKYFFVYEDQISKFVVLKGLRENTANEVAIKLMDILTIIGAPQVLQSRNGRNFAEQVVKELRLLWKDFIILHGEILENKENSRNFKDLLEDWVRDNPTKTWYEALKHVQIMQNSTFHCESGKIPYEILFGRNVHVEFQKQTSTVDSKENIWAEEEWFNTKDDGKKDGNENLTEDSSMRDADSSRDFDNDSYSDVKDDPQRDTPGFNFVNVRSESLNMHTEDSTFEDESVAEDKIKIETQDLKCTVCQKQYMKPGHLKNHMKTHIKRRKLECKLCNKKFHVLNLYEKHVRQSHKLKLFNLSRTRRSKDLQDDSMLDEKPPESKCFSDGTLSDTESNVTDKSPKTTKERKKVPTENRPLKMNGDPGLKCTYCNQKFNFPSVLKRHMRSHTNERPYICEICNKSFKQLGHLSQHTLTHKDYRSFHCTVCGVQFETLSSLKVHTQTHKEDYVSKTKEHFRLFECDNCKKVFTTKSVLERHILTHSQERQFACVVCGKRFKQAGHVKSHMLVHTGERKFECTVCKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCNICEKRFKQISHLNGHIVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKEQIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00963333;
- 90% Identity
- iTF_01123196;
- 80% Identity
- -