Mmes007373.1
Basic Information
- Insect
- Mechanitis messenoides
- Gene Symbol
- -
- Assembly
- GCA_959347415.1
- Location
- OY365762.1:8104919-8109086[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 2.1e-05 0.6 10.9 0.0 26 47 144 165 136 169 0.89 2 6 0.01 2.9e+02 2.3 0.1 22 52 195 225 190 226 0.83 3 6 0.00091 26 5.7 0.4 16 43 249 276 237 281 0.74 4 6 0.00011 3.1 8.6 0.3 18 52 279 313 274 315 0.90 5 6 8.6e-06 0.25 12.2 1.6 8 48 325 364 317 367 0.81 6 6 0.02 5.7e+02 1.4 0.2 23 48 396 421 388 424 0.86
Sequence Information
- Coding Sequence
- ATGACCTCCGAATATATTCAGGTTAAAAGAGACTCAGAATTCGGGGAACCATCAACTTCAAATGAAATCGTAATTAATAGgcattataaacaaaacttgaaaaataataaaaatgtagataaaaaTGTGAATAATGTAGAGTTTGTTAGTATTAAATTGGAACCTGATCCTTCAGATGAGAATTGCAAACCTGACCCAAGCTCATTGCTAGAGATTTCAAAGTGGCATAATGTATCTGTCAAAGAGGAACCGGTATACCACAGTATAGATGTAGAAGTTTCTATCAAGGAAGAGCCAACTGAGGATGATCCGGCCGAGgaTGTTTGTCACTATCCAGCAGAGAACAGTCCTCAAGTACCAtcacacatatacatacatagtgTTTCTGAGGAAGTTCTGAGTTTGAACTCGACTGTGGACGGAAAGTACATGTGTCCCATCTGTTACAAGCGTTTTACGAGCAAAGGAAATGTACAGAGGCACATGCAACTACACACAAGAGAGAAGCTGGAGTGCAACGTGTGCTTTAGACAGTTTGTTAAGAAATACTTGTACGAGAGACATCTCCTGACGCATTCCACAGAAAAGAGATTCAAATGCGAGGAATGCCAGAAGAACTTCAGAACGTCGTCCAATTTagaacaacataaaaaaatacaccttGTCATTAAGCCttttaaatgtgaaaaatgTTGCCGTCAGTTCGCTGTTAAGGCAAATCTAGTGAAACATCAGAGTACGGGTCGGTGCAAGCGATCTAACGACCAGCCCATAGTATGTACTGTATGTGATAAAGTGTTCAAAAGGGAGTTTCTGCTGAAGAGTCATCAGCGACGCCACACGACCGAGCGTCCCTTTACTTGCGACAAGTGCCACATGAGCTTCAAGTACAAGTCGACTTTGATTCGTCACGTTCAGCTTCACAACGGCATCAAGCCCTACTCTTGTAAAATATGCAGGAAGAGGTTCACTCATGCCGGTCTCATCAAGCCTCACATGAGGAAGCATACCGGAGAGAAACCGTATTCCTGTCccgtttgtaataaaactttcgCTCACAAACACAACATGCAGAGACATACGATACGACATACCAAGATCAAAAATCTAGTGTGTACGGTCTGCAGCAAAACTTTCCCTAAGGAAAGTCGTCTGATATATCACATGCGGACGCACACTAACGCGAAACCGTTTGTATGTGGTGTCTGTGATAAGAAATTCTCCCATCGACAAAACATAATGAGACACTACAGCCGCAAGCATCCCAACGACACCTACGACTGTCGCGACACAGACGCCAGTGTCGCTAAAGATGTATGGGAGAACGTTgttaaaggtaaaataaaaaccgaaTATAATGCAAATGGCggaaatgaaatagaaataagaatAACGCCGGATTGA
- Protein Sequence
- MTSEYIQVKRDSEFGEPSTSNEIVINRHYKQNLKNNKNVDKNVNNVEFVSIKLEPDPSDENCKPDPSSLLEISKWHNVSVKEEPVYHSIDVEVSIKEEPTEDDPAEDVCHYPAENSPQVPSHIYIHSVSEEVLSLNSTVDGKYMCPICYKRFTSKGNVQRHMQLHTREKLECNVCFRQFVKKYLYERHLLTHSTEKRFKCEECQKNFRTSSNLEQHKKIHLVIKPFKCEKCCRQFAVKANLVKHQSTGRCKRSNDQPIVCTVCDKVFKREFLLKSHQRRHTTERPFTCDKCHMSFKYKSTLIRHVQLHNGIKPYSCKICRKRFTHAGLIKPHMRKHTGEKPYSCPVCNKTFAHKHNMQRHTIRHTKIKNLVCTVCSKTFPKESRLIYHMRTHTNAKPFVCGVCDKKFSHRQNIMRHYSRKHPNDTYDCRDTDASVAKDVWENVVKGKIKTEYNANGGNEIEIRITPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00960331; iTF_01033940; iTF_01034843; iTF_00959836; iTF_00959574; iTF_00842877; iTF_00843170; iTF_00461760; iTF_00462032;
- 90% Identity
- iTF_00960331;
- 80% Identity
- iTF_00960331;