Isal000837.1
Basic Information
- Insect
- Ithomia salapia
- Gene Symbol
- -
- Assembly
- GCA_028829205.1
- Location
- JAPOND010000006.1:14368793-14375646[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 2.9e-05 0.87 10.5 0.0 26 47 143 164 135 168 0.89 2 6 0.0092 2.7e+02 2.5 0.4 22 52 194 224 171 225 0.88 3 6 0.00077 23 5.9 0.1 16 43 248 275 236 280 0.75 4 6 0.00011 3.3 8.6 0.3 18 52 278 312 273 314 0.90 5 6 1.2e-06 0.035 14.9 1.5 10 48 325 363 315 366 0.81 6 6 0.038 1.1e+03 0.5 0.1 23 48 395 420 386 423 0.84
Sequence Information
- Coding Sequence
- ATGACATCTGAATGTATTCAAATTACAAGGGACTCTGTTTTCGGTGAGCCATCTTCAGATGAAATCATAAATAATGGgcataataatcaaaatttggATAATTTCAAAAGTATAGAGAAAAATGTGAATAATGTAGAGTTTGTTAGTATTAAACTGGAGCCTGATACGTCTGATGAGCAttGCAAACCAGACCCAGGCTCTCTGCTGGAAATATCAAAATGGCATAATGTATCTATCAAAGAGGAGCCGGGGTTTCACAGTATAGGTGTTGAAGTCTCAATCAAGGAGGAGCCAACTGATGATGACACCAACGAGGATGCCTGTAGCTACCCAGCGGAGGAGAAGCCTCAAGTACCATCTCACATCTACATACACAGTGTGTCTGAGGAAGTGCTGAATCTGAACTCGACGGTGGACGGGAAGTACATGTGTCCGATCTGTTACAAGCGCTTCACTAGCAAAGGAAATGTACAGAGACACGTGCAACTACACACTCGGGAGAAGCTGGAGTGCAACGTGTGCTTCAGACAATTTGTCAAAAAATACGTATACGAAAGACATCTCCTAACACACTCTACTGAAAAGAGATTCAAATGCGAGGAATGTCAGAAGAGCTTCAGAACATCGTCTAATTTAGAACAGCATAAACGAATTCACCTCATCGTCAAACCATTTGAATGTCAAACGTGTTGCCGTCAGTTTGCGGTTAAGGCGAATCTAGTGAAGCATCAGAGTACGGGACGATGCAAGCGATCTAACGACCAGCCCATAGTTTGTGACGTGTGTGATAAAGTGTTCAAAAAGGAGTTTCTACTGAAGAGCCACCAGCGACGGCACACGACCGAGCGTCCATTCACGTGCGACAAGTGCCACATGAGCTTCAAGTACAAGTCGACTTTAATCCGCCACGTGCAGCTCCACAACGGCATCAAGCCTTACTCTTGTAAGATATGCAGGAAGAAGTTTACTCACGCCGGTCTCATCAAGCCCCACATGAGGAAGCACACCGGAGAGAAGCCCTACACCTGTCccgtttgtaataaaactttcgCTCACAAACACAACATGCAGAGACATACGATACGACACACCAAGATCAAGAATTTAGTGTGTACGGTCTGCAGCAAGACGTTCCCGAAAGAGAGCAGACTGATATATCACATGCGGACTCACACTAACGCTAAACCGTTCGTATGCGGCGTCTGTGATAAGAAGTTTTCTCACCGACAGAATATAATAAGACACTATGGTCGTAAGCATCCCAACGACACCTACGACTGTCGCGACACAGACGCTAGTGTGGCAAAGCACGTGTGGGAGAATGTCGTTAAAGGTAACATAAAGACGGAAAAGAATGTAAATTGCGAAGATGATTCAGAAATAAGAATAACACCGGATTGA
- Protein Sequence
- MTSECIQITRDSVFGEPSSDEIINNGHNNQNLDNFKSIEKNVNNVEFVSIKLEPDTSDEHCKPDPGSLLEISKWHNVSIKEEPGFHSIGVEVSIKEEPTDDDTNEDACSYPAEEKPQVPSHIYIHSVSEEVLNLNSTVDGKYMCPICYKRFTSKGNVQRHVQLHTREKLECNVCFRQFVKKYVYERHLLTHSTEKRFKCEECQKSFRTSSNLEQHKRIHLIVKPFECQTCCRQFAVKANLVKHQSTGRCKRSNDQPIVCDVCDKVFKKEFLLKSHQRRHTTERPFTCDKCHMSFKYKSTLIRHVQLHNGIKPYSCKICRKKFTHAGLIKPHMRKHTGEKPYTCPVCNKTFAHKHNMQRHTIRHTKIKNLVCTVCSKTFPKESRLIYHMRTHTNAKPFVCGVCDKKFSHRQNIIRHYGRKHPNDTYDCRDTDASVAKHVWENVVKGNIKTEKNVNCEDDSEIRITPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00960590;
- 90% Identity
- iTF_00461760;
- 80% Identity
- iTF_00842877;