Mmaz009294.1
Basic Information
- Insect
- Mechanitis mazaeus
- Gene Symbol
- -
- Assembly
- GCA_959347395.1
- Location
- OY365747.1:20916385-20921350[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 2.5e-05 0.68 10.7 0.0 26 47 217 238 209 242 0.89 2 6 0.013 3.4e+02 2.0 0.1 22 52 268 298 264 299 0.82 3 6 0.0003 8.1 7.2 0.6 16 43 322 349 310 354 0.75 4 6 0.00014 3.7 8.3 0.3 18 52 352 386 347 388 0.90 5 6 1e-05 0.28 11.9 1.6 8 48 398 437 390 440 0.81 6 6 0.024 6.4e+02 1.1 0.2 23 48 469 494 461 497 0.86
Sequence Information
- Coding Sequence
- ATGACCTCCGAATATATTCAGGTTAAAAGAGACTCAGAATTCGGGGAACCATCAACTTCAAATGAAATCGTAATTAATAGgcattataaacaaaacaaaaataataaaaatgtagataaAAATGTGAACAATGTAGAGtttgtaagtattaaattGGAACCTGATCCTTCAGATGAGAAttGCAGACCTGACCCAAGCTCACTGCTAGAGATATCAAAGTGGCATACTGTATCTGTCAAAGAGGAACCGGTATACCACAGTATAGATGTAGAAGTTTCTATCAAGGAAGAGCCAACAGAGGATGATCCGGCCGAGgaTGTTTGTCACTATCCAGCAGAGAACAGTCCTCAAGTACCAtcacacatatacatacatagtgCAGAAGGTCCTGGCAGTTGGCTGTATGGGACACTCCACATCAGGACCTCTCGTCGGTTGCCTAACCAGCTGAAAGAGGTTCAAGGACAATGCAAATTTCTGCTCCTCTCTTCCAGCATAGTCCGTCTTCTGACGAGCTGCGCTGAAGATGCAGAGCTACATCACCAGCCTCACTTAGGTACTCTAATAAGCGAGTTGTCTCCTGATCACCACTGGGCGAACGTTTCTGAGGAAGTTCTGAGTTTGAACTCGACTGTGGACGGAAAGTACATGTGTCCCATCTGTTACAAACGTTTTACGAGCAAAGGAAATGTACAGAGGCACATGCAACTACACACAAGAGAGAAGCTGGAGTGCAACGTGTGCTTTAGACAGTTTGTTAAGAAATACTTGTACGAGAGACATCTCCTGACGCATTCCACAGAAAAGAGATTCAAATGCGAGGAGTGCCAGAAGAACTTCAGAACGTCGTCTAATTTagaacaacataaaaaaatacaccttGTCATTAAGCCttttaaatgtgaaaaatGTTGCCGTCAGTTCGCTGTTAAGGCAAATCTAGTGAAACATCAGAGTACGGGTCGGTGCAAGCGATCTAACGAACAGCCTATAGTATGTACTGTATGTGATAAAGTGTTCAAAAGGGAGTTTCTGTTGAAGAGTCACCAGCGACGCCACACGACCGAGCGTCCCTTTACTTGCGACAAGTGCCACATGAGTTTCAAGTACAAGTCGACGTTGATTCGTCACGTTCAGCTTCACAACGGCATCAAGCCCTACTCTTGTAAAATATGCAGGAAGAGGTTCACTCATGCCGGTCTCATCAAGCCCCACATGAGGAAGCATACTGGAGAGAAACCGTATTCCTGTCccgtttgtaataaaactttcgCTCACAAACACAACATGCAGAGACATACGATACGACACACCAAGATCAAAAACTTAGTGTGTACGGTCTGCAGCAAAACTTTTCCTAAGGAAAGTCGTCTGATATATCACATGCGCACGCACACTAATGCGAAACCGTTTGTATGTGGGGTCTGTGATAAGAAATTCTCCCATCGACAAAACATAATGAGACACTACAGCCGCAAGCATCCCAACGACACCTACGACTGTCGCGACACAGACGCCAGTGTCGCTAAAGATGTATGGGAGAACGTTgttaaaggtaaaataaaaaccgaaTATAATGCAAATGGCGGAAATGAATCAGAAATGAGAATAACGCCGGATTGA
- Protein Sequence
- MTSEYIQVKRDSEFGEPSTSNEIVINRHYKQNKNNKNVDKNVNNVEFVSIKLEPDPSDENCRPDPSSLLEISKWHTVSVKEEPVYHSIDVEVSIKEEPTEDDPAEDVCHYPAENSPQVPSHIYIHSAEGPGSWLYGTLHIRTSRRLPNQLKEVQGQCKFLLLSSSIVRLLTSCAEDAELHHQPHLGTLISELSPDHHWANVSEEVLSLNSTVDGKYMCPICYKRFTSKGNVQRHMQLHTREKLECNVCFRQFVKKYLYERHLLTHSTEKRFKCEECQKNFRTSSNLEQHKKIHLVIKPFKCEKCCRQFAVKANLVKHQSTGRCKRSNEQPIVCTVCDKVFKREFLLKSHQRRHTTERPFTCDKCHMSFKYKSTLIRHVQLHNGIKPYSCKICRKRFTHAGLIKPHMRKHTGEKPYSCPVCNKTFAHKHNMQRHTIRHTKIKNLVCTVCSKTFPKESRLIYHMRTHTNAKPFVCGVCDKKFSHRQNIMRHYSRKHPNDTYDCRDTDASVAKDVWENVVKGKIKTEYNANGGNESEMRITPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00960590;
- 90% Identity
- iTF_00959574;
- 80% Identity
- iTF_00959574;