Lcup006574.1
Basic Information
- Insect
- Lucilia cuprina
- Gene Symbol
- Rel
- Assembly
- GCA_001187945.1
- Location
- JRES01000519.1:25105-29946[+]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2 4.3e+03 -2.8 0.2 103 135 93 125 75 152 0.51 2 3 1.2e-52 4.2e-49 166.4 1.1 1 168 166 344 166 345 0.91 3 3 1.3 4.5e+03 -2.9 0.2 112 154 567 612 554 618 0.50
Sequence Information
- Coding Sequence
- atggAAAATATGATGCCATATGTAAATGTTGCAAACGAAAAGGATTTTCTCAATATGGATACACTGGAACGTATACGAAGTGTCAGCGAATCTTCAATGGGTGGCACCAGTGGCTATAATAGCACAACATCTCCAGGACCTGAAAATTCTCCAAACTCAAGTCGTTATTCACCGGTACAATCACCAGATTCCATATTACAAAATGAATTTTCCCAATTAGTTATACCACCAATATCTTatcaacaaacacaacaaaattcCTCACAATATGTACAATTGCAAAATGtacaaatgaatttaaatagcagcaacaacaacaacaaccagcaAGCTATTTTATATCAACAACCACAATCACACAatcaaaatatgaatttttcacatttaaattttggaaatcctataaattttcaacagcagcaacaatttcAACAACCTATGGCCGCAGCAACATCAATGTCCTATACGGATGTTAAATATGAATACGAAGCTACTTTACGAATTACTGAACAACCGGTGGAGAAGTTTCGTTTTCGTTACAAGTCCGAAATGCATGGTACACATGGCTCTCTAAATGGTACCAATTcacaaagaaatacaaaaacttttccCGAAGTCGAACTATGCGGCTATAAGGGACCAGCCATCATACGCTGTAGTTTATTTCAGACTAATCGCGAGAGTCCACATTCACATCAGTTGGTGGTGCGCAAGGATGATCACGATATCTGTGACCCACACGAACTAAAAGTTTCCGAAGAAGTTGGTTATTTTGCAGAATTCAAAAATATGGGCATTATACATACAGCCAAGAAATTCATTGTTgaggaattattaaaaaagaaacgtaAACGTTTAGGTCGTGAAGTTCTGACAACAAAGGAAGATCAAGAGTTGTATAAGCAAACAGAAAAAGAAGCCAAGGATATGAATTTGAATCAGGTACGTCTATGTTTCGAAGCATTTCGTATTGAAGACAACAAATCTTACACACCCATTGCCGCTCCCGTCTATTCAAATCCCATTAACAATCGTAAATCAGCACAAACCGGAGAATTGCGTATTACACGCCTGAGTATTGCAACCGGTAATGTTGCAGGAGGCGATGATTTGATATTATTAGTGGAAAAAGTAAgcaaaaagaatataaaagtaCGATTCTATGAAATGGCCGACGATGAACAAGTATGGGAGGCATTTGCTACTTTTCGCGAATCCGATGTTCATCATCAATATGCAATCGTTTGCCGAACACCAGCCTATAAAGATAAGGATATCGATAAAGCCGTTGAGGTATTTATAGAGTTAGTAAGACCGTCAGATGATGAACGCAGTTATCCGCCTGTATCATTTCGTTATAAGCCCAGTGCTGCAGTAATATCACGTAAACGTAGGCGTACATGTTCATCTTTTAATAGCGGCTCCTGCAGCAATTCGGGTTCGTTAAGTTCAGGCGAGATACCTAAAACTATACAAGAAacacagaaaattttaaataaatcggaTGAACTTAAGGAATTATTAAATTCAGGATATATTAAGTCAGATGTATCATTAGATTCAGGCTTATTGGCATATTTAGATGATCCAAATATAAAAGATTTGGATTCAGTGCTAAATAATATGGAAAGTGGCGCAGGACGTATCGAAAGAGATGGTGTATGCACTACAAATGAAGCTAAAAATCACTATCACTATAAGAAATCTATGATTAGCAAAAAACAAATGGATTTAGCCAAACAGCAAAGTGTTCAACATCAACAGCCACTTAATTTATATTTGCAACGTATTTTAACCATATTTCAGGATACCATTAGATCTTCGACGCCAGCTAATACTACTAAACGAGATAGTGCCGCCGAACAAATTACCAAAATCATTAATGAACATTCAGAAAAATATGGCGAATCTCTGATACACGAAATCGTATTGGCGGACAATAATAAATACGCCATAccaatatttaaagttttagattatttcaatttaaatgaaCTTTTAAATACTCTTCTGAATAAACGAACACAGACGGCATTACACTATGCCTGCCTCTATGGTCAGCCCACATATATAAGACCTCTCTTGAAATTGGGCTGTAATCCCAATATACAAGATTCCGAAGGTAATACCGCTCTTCATATAGCAGTACATGAGAAACACTTGAAATGTTtggaaagttttattaattcgGAAATGCCTTTGAATTTGAATCACCTAAACGATGATGGTTTTACACCCTTACACTTGGCCATACGTGATAATAATTACGATATTGTGGCCAAACTATTAAAGTTTGATGCCAGCACTGTAGCAACGCCTTGCAGTAAAGATGGCAGTAATGCCTTACACATGGCGGTACAACAACAGAATCTAAAATTGGTTAATTTAATCTTGGACAATAGCCCCTTAATAGCTACTCTTTTATATGCCAATAATAGGGCCGGTCATACACCTTTGGATTTGGCCAAACAACTAGTAACGGCTGATGAACAAGGAAAACAGATATTAAGTCTACTAATGACTTTCTACAATAAATATCCTTCCCAggataaaacagaaaaaatggatattaacacatttaatgaagatgatgatgaggatGGAGAACATAAGCTGGTTATAAAAGAAGAAGAGAATTCATGTTCATCTACCGAAGATGATGAAGAGGATAACAGCAGTAATTTAAGTACAGCGGAAGCTAAAACAATAACCCTGACGCCAACacaaaacaaactaataaaacCAGTCgaaattaaacaagaaatagTCGATGATAATATTACAATTACAACTGCCCCTACAACAATACTCACTGTAGGGGATCTAGAGTtggctttaaataataaagatattttctCTAAACTAAGTGCTAAACTAAATGAGaatgaaaattggaaaaaaatggcCACAGCAATGGAAAtgacacatttttatttaacaaatgctCCAGCGTTTCTTAATTACTTAAAACGTAATATAAAAACAGTAAATTGTACACAATTTACAGcagaattagaaaaaattgacaaaagtttaataaatttattattaaataattaa
- Protein Sequence
- MENMMPYVNVANEKDFLNMDTLERIRSVSESSMGGTSGYNSTTSPGPENSPNSSRYSPVQSPDSILQNEFSQLVIPPISYQQTQQNSSQYVQLQNVQMNLNSSNNNNNQQAILYQQPQSHNQNMNFSHLNFGNPINFQQQQQFQQPMAAATSMSYTDVKYEYEATLRITEQPVEKFRFRYKSEMHGTHGSLNGTNSQRNTKTFPEVELCGYKGPAIIRCSLFQTNRESPHSHQLVVRKDDHDICDPHELKVSEEVGYFAEFKNMGIIHTAKKFIVEELLKKKRKRLGREVLTTKEDQELYKQTEKEAKDMNLNQVRLCFEAFRIEDNKSYTPIAAPVYSNPINNRKSAQTGELRITRLSIATGNVAGGDDLILLVEKVSKKNIKVRFYEMADDEQVWEAFATFRESDVHHQYAIVCRTPAYKDKDIDKAVEVFIELVRPSDDERSYPPVSFRYKPSAAVISRKRRRTCSSFNSGSCSNSGSLSSGEIPKTIQETQKILNKSDELKELLNSGYIKSDVSLDSGLLAYLDDPNIKDLDSVLNNMESGAGRIERDGVCTTNEAKNHYHYKKSMISKKQMDLAKQQSVQHQQPLNLYLQRILTIFQDTIRSSTPANTTKRDSAAEQITKIINEHSEKYGESLIHEIVLADNNKYAIPIFKVLDYFNLNELLNTLLNKRTQTALHYACLYGQPTYIRPLLKLGCNPNIQDSEGNTALHIAVHEKHLKCLESFINSEMPLNLNHLNDDGFTPLHLAIRDNNYDIVAKLLKFDASTVATPCSKDGSNALHMAVQQQNLKLVNLILDNSPLIATLLYANNRAGHTPLDLAKQLVTADEQGKQILSLLMTFYNKYPSQDKTEKMDINTFNEDDDEDGEHKLVIKEEENSCSSTEDDEEDNSSNLSTAEAKTITLTPTQNKLIKPVEIKQEIVDDNITITTAPTTILTVGDLELALNNKDIFSKLSAKLNENENWKKMATAMEMTHFYLTNAPAFLNYLKRNIKTVNCTQFTAELEKIDKSLINLLLNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00921873; iTF_00259547; iTF_00258637; iTF_00199634;
- 90% Identity
- iTF_00921873;
- 80% Identity
- -