Basic Information

Insect: Leucozona laternaria
Gene Symbol: -
Assembly: GCA_932273905.1
Location: CAKNZR010000269.1:169387-172711[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.82 1.5e+02 4.5 1.7 1 23 253 277 253 277 0.94

2 11 0.075 13 7.7 4.0 1 21 283 303 283 306 0.80

3 11 6.2 1.1e+03 1.7 0.5 1 9 311 319 311 321 0.87

4 11 0.4 72 5.5 3.3 1 13 340 352 340 364 0.78

5 11 3e-06 0.00053 21.6 3.6 1 23 370 392 370 392 0.98

6 11 0.0031 0.55 12.1 1.2 1 23 398 420 398 420 0.96

7 11 3e-05 0.0053 18.4 0.9 1 23 426 448 426 448 0.99

8 11 2.3e-05 0.0041 18.8 1.1 1 23 454 477 454 477 0.92

9 11 0.00027 0.048 15.4 2.6 1 23 492 514 492 514 0.98

10 11 6.4e-05 0.011 17.4 1.8 1 23 519 542 519 542 0.97

11 11 0.0003 0.054 15.3 1.2 1 23 548 570 548 570 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.82	1.5e+02	4.5	1.7	1	23	253	277	253	277	0.94
2	11	0.075	13	7.7	4.0	1	21	283	303	283	306	0.80
3	11	6.2	1.1e+03	1.7	0.5	1	9	311	319	311	321	0.87
4	11	0.4	72	5.5	3.3	1	13	340	352	340	364	0.78
5	11	3e-06	0.00053	21.6	3.6	1	23	370	392	370	392	0.98
6	11	0.0031	0.55	12.1	1.2	1	23	398	420	398	420	0.96
7	11	3e-05	0.0053	18.4	0.9	1	23	426	448	426	448	0.99
8	11	2.3e-05	0.0041	18.8	1.1	1	23	454	477	454	477	0.92
9	11	0.00027	0.048	15.4	2.6	1	23	492	514	492	514	0.98
10	11	6.4e-05	0.011	17.4	1.8	1	23	519	542	519	542	0.97
11	11	0.0003	0.054	15.3	1.2	1	23	548	570	548	570	0.97

Sequence Information

Coding Sequence: ATGTGCAGTGTGTTCAAATTAGATTTAAATAATTATAGTATTGAAGATGTCTGCAGAACGTGTGGTAGATGTGACGTTATAACATCTGCGAGCTTAATAAATATATTTTCTTCGGACTCTCAAGATCAACAAAAATTGAATATTCTTCGGCAATTCAATATATGGAAACTAAATATATCTGAAGATGATGGCCTGCCTCAAAAAATGTGTAAACAATGTGTTGGTAAATTCACACTTGTCCACAGTTTTCGCAAGCAGTGTGAAAACATTCAAAATGCTTTTAAAATACTCTTATTCGAACAACGTAGGTTAAGATCAACCAAAAAGACTGATAATAAAGATCATTCTACGTTTGAGAAGCTGCTAAAGGTACAGCCAAAACTGGAGGAGCAGCTCGCCGGTACTGAGAGCCAAGCCTTCGATTGCTTTGACGAGATTCCTTTCGAAGATGGAGAGTTCAAGAGTGTTCAATACTTTGAGCTCGAACCACACAAGCCATCAGACTGTGAAATTATCAAAGAGAATTCTTCAGAAGACAAAACAGAAACCCCAACGCCACCGATGGATAATACATCGGATACATTTTACGATGACGCTAATGGCGATGGATGCATTGCAGACGATTGGAATATAATATCGGAAGACGTTGTTCCTAAATTAGAACGCAATGATGATGATTCAAGTTTGGATTCCGATTTACTAAGCTCAGATGATGAACGCAAACTAAACCGTAAGAGCAAAGTAAGACCCAATCAATTCAAATGTGAATTCTGCAAAAACTTCTGCCTGGAAAATCAAGAGGATCTAGAAAATCATGTCAAGGAAATCCATTCAACTGAGACCCCTTACACGTGTTCCCTTTGTACAAAAACCTTCACCAATGCCAAACAACGAAATTGCCACTTTATGGTGAGCCATAAGTGGAAGTCGCACGAATGTGATGTTTGCCACAAAATGATAAAAGGCGGGAAGCCAGGTCTGAAGAACCACAAAGACAACGTTCACAACAAATCCGACTACGAGTGCAGTATATGCCAGAAAAAGTTTGAAAATATCTCCTTGAGTCGGTTTAGGTATCATCTGCGGTGGCATGATAGCTCCAAGCTATTTTCATGCAAATCTtgcgacaaaagctttgtcacccgatatcatctggaagaacacgaacgtacgcacaccgatgaaaagtccttcttgtgtaatatatgcggTCTAGGATTGCGGTGTAAACAGAATTTGATTTGGCATATGAAGACACATACAGGAGAAAGAACATATCAGTGCAATCAGTGCAATAAAGCCTTTCCAACACCAACTGCGCTGGCGTGTCACATAAAAACTCATAGTAACGAAAAAAAGCACGAATGTGAAATTTGCAATAAACTATTTAAAACAAAAGGAAGCCTCAAAACGCACATTGGTAATGTACACAAAGTCGATTTTAATGATGGAACTCCAAATTCATCACCCCGCTATTGTTGTCAATTGTGCCCAAGAAATTTCATCTTTGAACGCGATCTCATTAAGCATTTAAAAACGCACGAACATAGGCGGCACGTTTGTGAGGTATGCGGTCTGTCCTACCTACAGTCCTCCCACCTAAAGAAGCATATGGATACAGTGCATCTGAACATTAAGCCTCATGTGTGTGCTATTTGTGGACATGCTTTTCCTTTTGAATTTAATCTCAAACAGCACGAGCTTACACATAAAGGTCATGTTGAGAAGCATTTGATAGAACAGAAGCAAAATCAGACTTTTACACAAATTGTCCTACCAGTTATCCCTGCCTCTGCAGATATTCCGCAACCATCAGAACTCAATATCTTTGATATTAACAGCTCTTGTGATCAAACAGAGCAGCAAGAGTTTAGCAATCAACTAATCAATCAATGTGAACTAGAAACATTGAAATAA
Protein Sequence: MCSVFKLDLNNYSIEDVCRTCGRCDVITSASLINIFSSDSQDQQKLNILRQFNIWKLNISEDDGLPQKMCKQCVGKFTLVHSFRKQCENIQNAFKILLFEQRRLRSTKKTDNKDHSTFEKLLKVQPKLEEQLAGTESQAFDCFDEIPFEDGEFKSVQYFELEPHKPSDCEIIKENSSEDKTETPTPPMDNTSDTFYDDANGDGCIADDWNIISEDVVPKLERNDDDSSLDSDLLSSDDERKLNRKSKVRPNQFKCEFCKNFCLENQEDLENHVKEIHSTETPYTCSLCTKTFTNAKQRNCHFMVSHKWKSHECDVCHKMIKGGKPGLKNHKDNVHNKSDYECSICQKKFENISLSRFRYHLRWHDSSKLFSCKSCDKSFVTRYHLEEHERTHTDEKSFLCNICGLGLRCKQNLIWHMKTHTGERTYQCNQCNKAFPTPTALACHIKTHSNEKKHECEICNKLFKTKGSLKTHIGNVHKVDFNDGTPNSSPRYCCQLCPRNFIFERDLIKHLKTHEHRRHVCEVCGLSYLQSSHLKKHMDTVHLNIKPHVCAICGHAFPFEFNLKQHELTHKGHVEKHLIEQKQNQTFTQIVLPVIPASADIPQPSELNIFDINSSCDQTEQQEFSNQLINQCELETLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01318490; iTF_00665089; iTF_00665971; iTF_00694899; iTF_00694072; iTF_00664308; iTF_00984500;
90% Identity: -
80% Identity: -