Elun008611.1
Basic Information
- Insect
- Eupeodes luniger
- Gene Symbol
- -
- Assembly
- GCA_951509635.1
- Location
- OX608073.1:131280984-131288625[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.93 1.9e+02 4.4 1.7 1 23 152 176 152 176 0.92 2 13 0.071 14 7.9 4.0 1 21 182 202 182 205 0.80 3 13 6 1.2e+03 1.8 0.5 1 9 210 218 210 220 0.87 4 13 0.47 95 5.3 4.1 1 13 239 251 239 263 0.77 5 13 2.8e-06 0.00056 21.7 3.6 1 23 269 291 269 291 0.98 6 13 0.0029 0.58 12.2 1.2 1 23 297 319 297 319 0.96 7 13 2.8e-05 0.0057 18.6 0.9 1 23 325 347 325 347 0.99 8 13 2.2e-05 0.0044 18.9 1.1 1 23 353 376 353 376 0.92 9 13 0.00025 0.051 15.6 2.6 1 23 391 413 391 413 0.98 10 13 6.1e-05 0.012 17.5 1.8 1 23 418 441 418 441 0.97 11 13 0.00015 0.03 16.3 1.9 1 23 447 469 447 469 0.97 12 13 2.4e-05 0.0048 18.8 1.6 1 23 474 496 474 496 0.99 13 13 2.8e-07 5.6e-05 24.9 2.4 1 23 502 524 502 524 0.98
Sequence Information
- Coding Sequence
- atgaaaaaggtTGAAAACGAACCTTTTAAGTTGGAAAAATTACCCAATGTTCAGCCAAAACTGGAGCAGCAGTTTACCGCCGATGAGAGCCAGTCCTTCGAGTGTTTTGACGAGATTCCTTTTGAAGATGGGGAATTTAAGAGTGTTCAGTACTTTGAGCTCGAGCCCCACAAACCCCTAGACTCGAACAGTGAAGCTGTTAAGGCGAAGTCAtcggaagaaaaacaaaaacctgaaATGCAAACGGCACCTATTGATGGTACATCAGATTTGTTTTATGATGATACCAATGACTATGGAGGCATCGAAGAGGACGATTGGAATACGGTATCAGAGGATGTGGTTCCAAAATTAGAGCAAAATGATGATGTTGAATCAAGCTTAGATTCCGATTTGCTAAGTTCAGATGATGAACGCAAAATTAACCGTAAAAGCAAAGTAAGacccaatcaatttaaatgtgaatattgtAAAAACTTCTGCCTGGAAAATCAAGAGGACCTGGATAATCATGTTAAAGAAATCCATTCAACTGAAACCCCATACACATGCTCTCTTTGTACAAAAACCTTTACAAATGCCAAACAACGAAATTGCCATTTTATGGTGAGCCATAAGTGGAAGTCGCATGAATGTGATGTCTGTCACAAAATGATAAAAGGCGGCAAGCCAGGTCTGAAAAATCACAAAGATAATGTTCACAACAAATCCGACCATGAGTGTAATATTTGCCATAAAAAGTTCGAAAATATCTCCTTGAGTCGGTTTAGATACCATTTACGGTGGCATGATAGCTCCAAGTTGTTTTCATGCAAATCTTGCGATAAAAGTTTTGTCACTCGATATCACCTGGAAGAACATGAACGTACGCATACCGATGAAAAGTCCTTCCTGTGCAATATATGCGGTCTAGGACTGCGGTGCAAGCAGAACTTAATTTGGCACATGAAGACACATACGGGAGAAAGGACGTATCAGTGCAATCAATGCAATAAAGCTTTTCCAACACCAACTGCGCTAGCGTGTCATATAAAAACTCACAGTAACGAAAAAAAACACGAATGTGAAATTTGCAATAAACTCTTTAAAACAAAAGGAAGCCTCAAAACGCACATTGGTAATGTACACAAAGTCGATTTTAATGATGGAACTCCAAATTCTTCGCCACGCTATTGTTGTCAATTGTGTCCGAGAAATTTCATCTTTGAACGCGATCTCATTAAGCACTTAAAAACGCACGAACATAGGAGACATGTTTGTGAGGTATGCGGGTTGTCCTACCTACAATCTTCCCACCTTAAAAAACATATGGACACAGTGCATCTGAATATTAAACCTCATGTATGTTCTATTTGTGGTCATGCGTTTCCATTTGAATTTAATCTTAAACAACACGAGCTTACACATAAGGaaaAGGGATTTAAGTGTATGGTGTGCGATAAGGCATTTACGTTGCATCCATCATTGGTTTCCCATCAGAGAACTCACACTGGCGAAAAACCATACCAATGCCATATATGTCAAAAGGCATTCACAAATAGAGGAAATCTTAAAAGTCATGTGGAGAAACATTTAATAGAGCAGAAGCAAAATCAGACTTTTACACAAATTGTCCTACCAGTTATCCCTGCTTCAGCAGAAATTCCGCAACCATCAGAGCTGAATATCTTTGATATAAACAGCTCGTGTGATCAAACAGAACAAGAAGATTTTAGCAATCAACTTATCATTCAATGTGAACTGgaaccattaaaataa
- Protein Sequence
- MKKVENEPFKLEKLPNVQPKLEQQFTADESQSFECFDEIPFEDGEFKSVQYFELEPHKPLDSNSEAVKAKSSEEKQKPEMQTAPIDGTSDLFYDDTNDYGGIEEDDWNTVSEDVVPKLEQNDDVESSLDSDLLSSDDERKINRKSKVRPNQFKCEYCKNFCLENQEDLDNHVKEIHSTETPYTCSLCTKTFTNAKQRNCHFMVSHKWKSHECDVCHKMIKGGKPGLKNHKDNVHNKSDHECNICHKKFENISLSRFRYHLRWHDSSKLFSCKSCDKSFVTRYHLEEHERTHTDEKSFLCNICGLGLRCKQNLIWHMKTHTGERTYQCNQCNKAFPTPTALACHIKTHSNEKKHECEICNKLFKTKGSLKTHIGNVHKVDFNDGTPNSSPRYCCQLCPRNFIFERDLIKHLKTHEHRRHVCEVCGLSYLQSSHLKKHMDTVHLNIKPHVCSICGHAFPFEFNLKQHELTHKEKGFKCMVCDKAFTLHPSLVSHQRTHTGEKPYQCHICQKAFTNRGNLKSHVEKHLIEQKQNQTFTQIVLPVIPASAEIPQPSELNIFDINSSCDQTEQEDFSNQLIIQCELEPLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00894292;
- 90% Identity
- iTF_00664308;
- 80% Identity
- -