Basic Information

Insect: Lasioglossum vierecki
Gene Symbol: Rreb1
Assembly: GCA_028455595.1
Location: CM052338.1:14610791-14617145[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.039 3.3 8.5 1.5 1 23 47 69 47 69 0.96

2 14 0.00024 0.02 15.5 0.7 1 23 83 105 83 105 0.97

3 14 4e-06 0.00033 21.1 1.3 1 23 111 134 111 134 0.98

4 14 0.014 1.1 10.0 1.2 1 23 225 249 225 249 0.96

5 14 0.12 10 7.0 0.1 1 23 467 489 467 489 0.96

6 14 2.9e-05 0.0024 18.4 1.1 1 23 498 520 498 520 0.98

7 14 0.0013 0.11 13.2 2.8 1 23 526 549 526 549 0.97

8 14 0.00083 0.07 13.8 2.3 1 23 936 959 936 959 0.96

9 14 0.00067 0.057 14.1 0.1 3 23 1246 1266 1244 1266 0.97

10 14 0.94 79 4.2 6.5 1 23 1272 1295 1272 1295 0.97

11 14 0.0042 0.35 11.6 2.2 1 23 1333 1357 1333 1357 0.97

12 14 0.67 56 4.7 5.5 1 23 1450 1473 1450 1473 0.93

13 14 0.011 0.96 10.2 0.4 2 23 1524 1545 1523 1545 0.94

14 14 1.4 1.1e+02 3.7 8.2 1 23 1551 1573 1551 1573 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.039	3.3	8.5	1.5	1	23	47	69	47	69	0.96
2	14	0.00024	0.02	15.5	0.7	1	23	83	105	83	105	0.97
3	14	4e-06	0.00033	21.1	1.3	1	23	111	134	111	134	0.98
4	14	0.014	1.1	10.0	1.2	1	23	225	249	225	249	0.96
5	14	0.12	10	7.0	0.1	1	23	467	489	467	489	0.96
6	14	2.9e-05	0.0024	18.4	1.1	1	23	498	520	498	520	0.98
7	14	0.0013	0.11	13.2	2.8	1	23	526	549	526	549	0.97
8	14	0.00083	0.07	13.8	2.3	1	23	936	959	936	959	0.96
9	14	0.00067	0.057	14.1	0.1	3	23	1246	1266	1244	1266	0.97
10	14	0.94	79	4.2	6.5	1	23	1272	1295	1272	1295	0.97
11	14	0.0042	0.35	11.6	2.2	1	23	1333	1357	1333	1357	0.97
12	14	0.67	56	4.7	5.5	1	23	1450	1473	1450	1473	0.93
13	14	0.011	0.96	10.2	0.4	2	23	1524	1545	1523	1545	0.94
14	14	1.4	1.1e+02	3.7	8.2	1	23	1551	1573	1551	1573	0.98

Sequence Information

Coding Sequence: ATGGTCAACGGACCTGTCTACCAGCTGAACCCTCGTGTTTTCGTTACTGTCAAGAGTAGCCCCGAACAGGGACGCGACAACGAAGCTCAAGTTGACGCAGCATCACCACTCTCAAGTGTGGAGTTACCGGAAAGTGCTCACCCCTGCCCAGCGTGCCCCACAGTGCTGCCTAGTTGCCGTGAGCTGACGCACCACCTGCGCGACCACAACTCTCCGCGCAGCACCGATTGCAGCGTCGAGGACGATTTCTGTTGCACCGTTTGCAACAAGGTGCTCAGCTCGGCGAGCTCTTTGGACAGACACGTGCTGGTGCACTCCGGAGAACGACCGTTCAAATGCAAATTCTGCGAGATGGCGTTCACGACGAACGGAAACATGAACAGACACCTGCGAACAGCGCACTGTTCAACCTCCTCGCTGAGTTGCACGGATTCGGAGGTTAGTTGCGACTCCGAGAAACTGTCGAAGAGGAACATCGAGGAGTACAACAACAACGAGATCGCGAAAAGAAAATCACCGGACTTGATCGACCAAGACCAGGAGAAGAGTCCCAGCCTGAAGAGAAAGTGCACGGAGTATCTGCGCGACATCGAGAACCAGAAGAGACACAAGATTCTCTTAAACAACTCGCGGCCCGAGGTCAAGGCCAGACCGGACGACAGCCAGAAAGCGTACAACTGTCCGGTATGCGGGAGGAAAAACTTCGGGACCAGCCGGCTTCTGGAGAGTCACCTGGAGCGTTGCCACCCGGACTTCGTGCCGAACTGCGATCCCTGCGATCTGTCCTTCGGTAACTGCCGTGTGATGAACCTGCACCAGTACATGCTGCAGTACGAGGACCAACCGACCGGGAACACCACGAGGAACCTGCGCAACTCCGTGGTCGGCTTCAACGATCTGACCTTCGTCGACTTCTCCTCGGAAAAATTCCCGACGATCGCGCGGGCGGTCTGCGAGCAATCGGTTCATCGGCCTGCCTCGGGAGAGGTCGCCAAGTTCCAGTGCTCCAAGTGTCTGAGGGCGTTCCCCTGCAGATTAGCCTTGGACGCTCACGAAAGCGACTGCGGCACGGTGAACGCTCCGCTCAGGGTGATGAACGACAGCCAGTCGAGGAGGGACGATTTCTTCGCCGGGCTGAATCTGCAGAACAAGGCTGCCATGACCGAGGCGAAAGAGGGCAAAGACCTGGCCGATATCCAGAGCATCATCTCCGTCACCTCCGGCCCCATCCTGCAGAACTTCCCCAGATCGGACGCCAGCACTCCCGAGAACAACATCAAGTTCAACGTGAATCTTAGTTCATCGGGCTCCTCCGGCACCTTCTCCACCGAGTCCCACGAGGAGGAGATGCAGGACGTATTTTCGGCCGAGTTCAGGAAGATGAAACTGAAGGGCGAATTCCCCTGCAGACTGTGCAAAGCGATCTTCCCGAACCTGAGAGCGTTGAAGGGCCACAATAGGGCGCACATGGGGGTCGCGCCTGGCCAGCCGTACCCCTGCAATATGTGTTCGTACACGAGCACAGACAAAGGGACCCTGACCAGACACCTGAGATCCCACAACGGAGATAGGCCTTACGAGTGCTCGTTGTGCAACTACGCTTTCACGACGAAGGCGAACTGCGAGCGACACGTGAGAAACAGGCACGGGAAGCTCACCCGAGAGGACATCAAGAGCGTTCTGATCTATCATCCGAACGAGGACTCGACGACCGAGAACGCGGAGAGAAGCTCGCCCAGAGTGATCAAAGACGATCCGAGGAAAAGCTTGATGTATCCTAACGAGCGCGACGAGCTGCACCATCAGACGCAGATGCGATATCCATCGGTACCGATGGAGGGCCGCAGCGAGATCAGGATCATCGAGGAGGCGAAGCTGCACAATTCGTTGTCCCTGCGTCACAACGCTCGCTACGAGAATGCCGAAGCGTTCCCGATGTCGAGCCACCAACCGATAGAGTTAACGAGGAACGCGGACGATGGAAAGTCCGTAGACACGAAGCAGGATTACGCGCAGCAGGACTACACGAAGCTCGAAGAGGACCTGGAGTCAAGATCATCGGTAGACAGCGTGTCTCTAGTCAGTGATACCAAATCCGAATCACACCAAAGAATACAAGCTAGTCCGATGAACCTGAAGAAGGCTCTGACGGTATCGGAGACTGTCGGCGAGGACGGTCCTCTGGATCTATCCATGGACGTTCTAGATCTCAGTAAGAAGACAAAGGGAAACGAGGATGGCAATTGCTCGGCCTCGCAGGATGGCTACGGTAAGAGCCAGAAGGAGATGTACGATGCCGTGAAGAGTCGGCTATTGATCACACAGGCCCTGCTGAAGGCTGGCCAGGGCAATCCACCGCCTTGTTCCCTGGATACGCTTTACGCGAACGCTCAGCTGATCTACGGAAACTTTGGATCGTTCCCTGGAACCGTGGGACCGGGAATATTGCCACCGTACTTGTTCAATCCCCACGTGTTCGGTCAGGATTTCACCGTGAAAGAGACACTGCAGAAAGAGTTAGTCAGGGGTCTGCAGCTGACCAGCGGTGGAACTTTGGTGGAGCCTCCGATCGGGACCACCACCGGGTACAATGCGTATCCTCCAGCGAGAGACATGAACCAGCAAACGGCGAACGAACAGAACGAATACGCCAAGCTGATCCAATCGAAGTTGACGGGCAAGGTGCTAGCTAACCGAGAGAAACCCGAGAACCACGTGCCCTCGTCGAACTCGGTGAAAATGGTGATTAAAAACGGCGTGCTGATGCCCAAGCAGAAGCAGAGACGGTACAGAACCGAGAGACCGTTCATCTGCGAACATTGCTCCGCGAAATTCACCTTGCGTAGCAACATGGAGAGGCACATTAAGCAGCAGCACCCCGACTTCTGGAGCCAAAGACCCAGAGGAGGACACTCGACCAGGGGAAGACCTCCTTCCAGCCATCTGACATTGCTGCAGAGTTTGGAGCAATCGGCGGCACAGCTGACCCAATCGTATTCCACCATTCTGCCCAAGGCGGATCAATCGAGCGCAGATTACCCCACCGCGAAGCATCCCATATCGGATCAGGTGAAATACGCGATCCTGGCGCAGCAGCTCAAGGCGAACAAGATCGAGGACAACGAACATTCCGAGGAGGAGCTGGTGATCGACGAGGGTCCGCAGGAGAAGGAGCAGGAATCTCAGAAGGAGAAGCGCACCAGTTTGTTGAGGGGCCAGTTGGAAGGATCAGAGGTCGCGAAAGAGATCAAAGAAGACGTTCAGAAATGCGATAAAGAGGTCGCGAAAGAGGACGTTAAAGAAGACGCGACCAATACCGAGTCCTCGAACAGCAACAACGAGAAAGAGGACGAGGCCAAGATGACTGACAGGACGACGGACAAGACGGACAAGGAACCGTCGTCGGAGATGAACGAGTCGAGCGACGTCGACAAGAAAACGAGCAAGCCTGAACAGGAGGAAGAGAAGGCGGAGAAGGCTGAAGACGCTGCTACCGACTTGGCCAGCGTGTCGGAATTGTTGGACAACGCCTCGCAGCAGTACCAACAATTCCAACCTCAGTATCTGAGCGACGAAGAAGGATTGGTCGCATCGAACAGCGACTGCAACAACTCCGGCAGCGACGAGAAGTCTGACTCGGTGAACTCGTTCAATTCCGAGACTGCCTCGTCCAAGAAAAAGAAGAAGAAAATGAAGAAGAAATCCGCGTACTCGATGGCTCCGAACCGAGTGATCTGTCCGTACTGCGAGAGGCCGTTCCCCTGGACATCGTCGCTCAGAAGACATATTCTGACGCACACCGGACAGAAGCCGTACCAGTGTATGCATTGTTCGCTGCTCTTCACCACCAAGTCGAACTGCGACCGCCATTTGCTGAGAAAGCACAAGGCGAACCCGAACAAGATACGCAGGGTCCGAAACTCCTCGTCGCCGGACAGTCAAGCGGCGATCAGCAACAGCAACTCCTTCTCGATGAGGAACGTGCCCGAGAGGCCGTACAAGTGCAATCAGTGTCCCAGCTCGACCTTCTCCACTTTGGGCAACCTGAAGAAGCATCGTTCGACGAAGCACGCGCGAAAAGTCAAGTCCAGGTCCGACACCCCGTCCAGCGAACCTCAGAACAGTCCGCAAGAATGCTCGAAACAGAACGAACAAAACGAGCAAAACGAACAGAACGAACAGACCGACTACGACAGCCAGTCGTCCAGCGTCTCCGAAAACATGGAGACCGCTTCGGTGTCGGGACTATCCAAGTCGACGAACCTGAACACCTTGCCGTCCACCAACGACGCGCCCAGATCCAGGAGACCTTCTCCGAGGTCGTCGCCCGGGCCGAGCGACGTACCGTTCAAGTGTCACCTGTGCGACTGCGGATTCTCCGACAGGCAGGATTGTCTCGAGCACATCAAAGCAAATCATAAAAGATCGTATGAGATGCTGGTGGCTAAGGGAGCTCTCGACATGGACATCGACACCGTGGAGGACCAGCAACAGCCGCCTCCTTCTCAGCATCACAGCGACGGCGAAGAGAAGAGAGGTCGATTCCCTGACTACAGCAATAGGAAGGTGGTCTGTGCTTTCTGTATGAGGCGTTTCTGGTCCGCGGAGGATCTCCGACGACACATGAGGACACACACCGGCGAGAGACCGTTTTCCTGCGACATCTGCTGCAGGAGATTCACGCTGAAGCACAGCATGCTGCGGCACAGGAAGAAGCACGAGTCGATAGACTCGACGATGTACGTGGGCACCAGCGGGGACGAAGAGAACGCGCCGACCCAACCAGCTACCATCGCGCCGAGGACGCAACAGCAACAAGCACCGGTTCTGCTAGCTGCGAACTCTGGAAACCCAAGGATACAGGATAGAATATCGTTGCCAAACATGGCACCGGTTGTAACGGGGGATGCTGCGCCTAGCGGACTCGCGCGTTTCCATCCCTACGAGAAGCTGACAACGTTGACGGGTAAGCTGGCTAGTATTCCGCAAAACGCGAATCCCGAAGCCAGCGAGAACACCGACAACGATCTAATCTCGAATCTATTGGGGATCAGGGATAAGACGTTTATAGACAGAGTGCTTCAATCGACCCCCGACGACGCAGCCAAACTTCTCGGGGTGCAACACAGCCACGAGTGA
Protein Sequence: MVNGPVYQLNPRVFVTVKSSPEQGRDNEAQVDAASPLSSVELPESAHPCPACPTVLPSCRELTHHLRDHNSPRSTDCSVEDDFCCTVCNKVLSSASSLDRHVLVHSGERPFKCKFCEMAFTTNGNMNRHLRTAHCSTSSLSCTDSEVSCDSEKLSKRNIEEYNNNEIAKRKSPDLIDQDQEKSPSLKRKCTEYLRDIENQKRHKILLNNSRPEVKARPDDSQKAYNCPVCGRKNFGTSRLLESHLERCHPDFVPNCDPCDLSFGNCRVMNLHQYMLQYEDQPTGNTTRNLRNSVVGFNDLTFVDFSSEKFPTIARAVCEQSVHRPASGEVAKFQCSKCLRAFPCRLALDAHESDCGTVNAPLRVMNDSQSRRDDFFAGLNLQNKAAMTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPENNIKFNVNLSSSGSSGTFSTESHEEEMQDVFSAEFRKMKLKGEFPCRLCKAIFPNLRALKGHNRAHMGVAPGQPYPCNMCSYTSTDKGTLTRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTTENAERSSPRVIKDDPRKSLMYPNERDELHHQTQMRYPSVPMEGRSEIRIIEEAKLHNSLSLRHNARYENAEAFPMSSHQPIELTRNADDGKSVDTKQDYAQQDYTKLEEDLESRSSVDSVSLVSDTKSESHQRIQASPMNLKKALTVSETVGEDGPLDLSMDVLDLSKKTKGNEDGNCSASQDGYGKSQKEMYDAVKSRLLITQALLKAGQGNPPPCSLDTLYANAQLIYGNFGSFPGTVGPGILPPYLFNPHVFGQDFTVKETLQKELVRGLQLTSGGTLVEPPIGTTTGYNAYPPARDMNQQTANEQNEYAKLIQSKLTGKVLANREKPENHVPSSNSVKMVIKNGVLMPKQKQRRYRTERPFICEHCSAKFTLRSNMERHIKQQHPDFWSQRPRGGHSTRGRPPSSHLTLLQSLEQSAAQLTQSYSTILPKADQSSADYPTAKHPISDQVKYAILAQQLKANKIEDNEHSEEELVIDEGPQEKEQESQKEKRTSLLRGQLEGSEVAKEIKEDVQKCDKEVAKEDVKEDATNTESSNSNNEKEDEAKMTDRTTDKTDKEPSSEMNESSDVDKKTSKPEQEEEKAEKAEDAATDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSFNSETASSKKKKKKMKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCMHCSLLFTTKSNCDRHLLRKHKANPNKIRRVRNSSSPDSQAAISNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKVKSRSDTPSSEPQNSPQECSKQNEQNEQNEQNEQTDYDSQSSSVSENMETASVSGLSKSTNLNTLPSTNDAPRSRRPSPRSSPGPSDVPFKCHLCDCGFSDRQDCLEHIKANHKRSYEMLVAKGALDMDIDTVEDQQQPPPSQHHSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENAPTQPATIAPRTQQQQAPVLLAANSGNPRIQDRISLPNMAPVVTGDAAPSGLARFHPYEKLTTLTGKLASIPQNANPEASENTDNDLISNLLGIRDKTFIDRVLQSTPDDAAKLLGVQHSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00866908; iTF_00861415; iTF_00860633; iTF_00863482; iTF_00864844; iTF_00862101; iTF_00864177; iTF_00865528;
90% Identity: iTF_00860633;
80% Identity: -