Basic Information

Insect: Lasioglossum oenotherae
Gene Symbol: RREB1
Assembly: GCA_028455765.1
Location: CM052286.1:4029055-4039261[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.038 3.1 8.6 1.5 1 23 46 68 46 68 0.96

2 15 0.00022 0.018 15.6 0.1 1 23 82 104 82 104 0.97

3 15 3.8e-06 0.00031 21.2 1.3 1 23 110 133 110 133 0.98

4 15 0.013 1.1 10.0 1.2 1 23 225 249 225 249 0.96

5 15 9.7 8e+02 1.0 0.4 1 10 333 342 333 351 0.88

6 15 0.19 15 6.4 0.1 1 23 467 489 467 489 0.96

7 15 6.8e-05 0.0056 17.2 0.6 1 23 498 520 498 520 0.98

8 15 0.0012 0.1 13.3 2.8 1 23 526 549 526 549 0.97

9 15 0.0009 0.074 13.7 2.8 1 23 930 953 930 953 0.97

10 15 0.00064 0.053 14.1 0.1 3 23 1232 1252 1230 1252 0.97

11 15 0.89 74 4.2 6.5 1 23 1258 1281 1258 1281 0.97

12 15 0.004 0.33 11.6 2.2 1 23 1319 1343 1319 1343 0.97

13 15 0.31 26 5.7 5.7 1 23 1426 1449 1426 1449 0.96

14 15 0.011 0.9 10.3 0.4 2 23 1499 1520 1498 1520 0.94

15 15 1.3 1.1e+02 3.7 8.2 1 23 1526 1548 1526 1548 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.038	3.1	8.6	1.5	1	23	46	68	46	68	0.96
2	15	0.00022	0.018	15.6	0.1	1	23	82	104	82	104	0.97
3	15	3.8e-06	0.00031	21.2	1.3	1	23	110	133	110	133	0.98
4	15	0.013	1.1	10.0	1.2	1	23	225	249	225	249	0.96
5	15	9.7	8e+02	1.0	0.4	1	10	333	342	333	351	0.88
6	15	0.19	15	6.4	0.1	1	23	467	489	467	489	0.96
7	15	6.8e-05	0.0056	17.2	0.6	1	23	498	520	498	520	0.98
8	15	0.0012	0.1	13.3	2.8	1	23	526	549	526	549	0.97
9	15	0.0009	0.074	13.7	2.8	1	23	930	953	930	953	0.97
10	15	0.00064	0.053	14.1	0.1	3	23	1232	1252	1230	1252	0.97
11	15	0.89	74	4.2	6.5	1	23	1258	1281	1258	1281	0.97
12	15	0.004	0.33	11.6	2.2	1	23	1319	1343	1319	1343	0.97
13	15	0.31	26	5.7	5.7	1	23	1426	1449	1426	1449	0.96
14	15	0.011	0.9	10.3	0.4	2	23	1499	1520	1498	1520	0.94
15	15	1.3	1.1e+02	3.7	8.2	1	23	1526	1548	1526	1548	0.98

Sequence Information

Coding Sequence: ATGGCGGACCGGAAGTGGACACTGAGACGAGAAGAGAAGATTACTGTCAAGAGTAGCCCCGATCAGGGACGCGACAACGAAGCCCAAGTTGATGCAGCATCGCCACTCTCAAGTGTGGAGTTACCGGAAAGCGCTCACCCCTGTCCCGCGTGCCCCACGGTGCTGCCTAGCTGCCGAGAGCTGACACACCACCTGCGCGACCACAACTCTCCGCGCAGCACCGATTGCAGCGTCGAGGACGATTTCAGTTGCGGCGTTTGCAACAAGGTGCTGAGCTCCGCGAGCTCTTTGGACAGACACGTGCTGGTGCACTCCGGAGAACGACCGTTCAAATGTAAATTCTGCGAGATGGCGTTCACAACGAACGGAAACATGAACAGACACCTGCGAACAGCGCACTGTTCAACCTCTTCGCTCAGTTGCACGGACTCGGAAGTCAGTTGCGACTCGGAGAAACTGTCCAAGAGGAACATCGAGGAGTACAACAACAACGAGATCGCGAAAAGGAAATCGCCGGACTTGATCGACCAAGACCAGGAGAAGAGTCCGAGTCTGAAGCGAAAGTGCACGGAGTATCTGCGCGACATCGAAAACCAGAAGAGACACAAGATCCTGCTGAACAACTCGAGCCGGCCCGAGGTCAAGGCCAGACCCGACGACAGCCAGAAAGTGTACAACTGCCCTGTATGCGGGAGGAAGAACTTCGGGACCAGCCGGCTCCTGGAGAGTCACCTGGAGCGCTGCCACCCGGACTTCCCGCCGAACTGCGACCCCTGCGACCTGTCCTTCGGTAACTGCCGGGTGATGAACCTGCACCAATACGTGCTCCAGTACGAGGACCAACCGATCGGGAACACCACGAGGAATCTGCGCAACTCCGTGGTCGGCTTCAACGACCTGACCTTCGTTGACTTCTCCTCGGAAAAATTCCCGACGATCGCTCGAGCGGTCTGCGAGCAATCGGTTCATCGGCCTGCCTCGGGAGAGGTCGCCAAGTTCCAGTGCTCCAAGTGTCTGAGGGCGTTCCCCTGTAGATTAGCCTTGGACGCTCACGAAACCGATTGCGGCACGGTGAACGCTCCGACCAGGGTGATCAACGACAACCAGTCGAGAAGAGACGACTTCTTCGCCGGCCTGAACCTGCAGAACAAGGCTGCCATGACCGAGGCGAAAGAGGGCAAGGACCTGGCCGATATACAGAGCATCATCTCCGTCACCTCCGGCCCCATCCTGCAGAATTTCCCCAGATCGGACGCTAGCACACCCGAGAACAACATCAAGTTCAACCTGAATCTTAGCTCTTCAGGCTCCTCCGGCACCTTCTCCACGGAGTCCCACGAGGAGGAGGCGCAGGACGCGTTCTCGGCCGAGTTCAGGAAGATGAAACTGAAGGGTGAATTCCCCTGTAGACTGTGCACCGCGATCTTCCCGAACCTGAGAGCGCTCAAGGGCCACAACAGGGCGCACATGGGGGTCGGACCTGGCCAGCCATACCCTTGCAATATGTGTTCGTACACGAGCACGGACAAAGCGACCTTGGTCAGACACCTGAGGTCCCACAACGGCGATAGGCCTTACGAGTGCTCGTTGTGTAACTACGCGTTCACAACGAAGGCGAATTGCGAGCGGCACGTGAGGAACAGGCACGGGAAGCTCACCAGAGAGGACATCAAGAGCGTTCTGATCTATCATCCGAACGAGGACTCGACAACCGACAACGCGGAGAGAAGCTCGCCCAGAGTGATAAAAGATGACCCAAGGAAATCTTTGATGTTCCCTAACGAGCGGGACGAGCTGCAGCATCAGACGCAGATGCGTTATCCATCGGTACCGATGGAGGGACGCAGCGAGATTAGGATCATCGAGGAGGCGAAGCTGCATAATTCGTTGTCCCTGCGCAACAGTCGCTACGAGAATGCCGAGGCGTTCCCGATGTCGAGCCACCAGCCGATGGAGTTAACAAAGAACGCGGACGATAGAAAGTCCGTGGACGCGAAGCAGGACTACGCGAAGCTCGAGGAGGACCAGGAGTCGAGGTCCTCGGCAGGCAGCGTGTCTCTAGTCAGTGATACCAAATCCGAATCGCACCAAAGAATTCAAGCTAGTCCGATGAACCTGAAGAAGGCTCTGACGGTATCGGAGACTGTCGGCGAGGACGGTCCTCTGGATCTATCCATGGATGTTCTAGATCTCAGTAAGAAGACGAAGGAAAACGAGGACGGCAGTTGCTCGGCCTCGCAAGATGGATACGGGAAGAGCCAGAAGGAGATGTACGATGCTGTGAAGAGTCGACTATTGATCACCCAAGCCCTGCTGGCCAAGGCTGGCCAAGGGAACCCGCCGCCTTGTTCCCTGGACTCGCTTTACGCGAATGCTCATCTGATTTACGGAAACTTTGGAGCGTTCCCCGGAACTGTAGGAGCGGGAATATTGCCACCGTACTTGTTCAACCCGCACGTGTTCGGTCAGGACTTCACCGTGAAAGAGACACTGCAGAAGGAGTTAGTCAGGGGCCTGCAGCTGACCAGCGGCGGCACGTTGGTGGAGCCTCCGATCGGGACCACCGGCTACAACGCATATCCTCAAGGAAGAGACATGAATCCGCAAACGGCGAACGAACAGAACGAGTACGCGAAGCTGATCACATCGAAGCTGACGGGTAAGGCGCTAGCGAATCGAGATAAACCCGAGAACCACATACCCTCGTCGAACTCTGTGAAAATGGTGATAAAAAACGGCGTGCTGATGCCCAAGCAGAAGCAGAGACGGTACAGAACCGAGAGACCTTTCACCTGCGGACATTGCTCCGCGAAATTTACCTTGCGGAGCAACATGGAGAGACACATTAAACAGCAGCACCCTCAGTTTTGGAGCCAAAGACCCAGAGGAGGGCACTCGACCAGGGGAAGACCTCCTTCGAGCCATCTGACTTTGTTGCAGAGTTTGGAGCAATCGGCGGCCCAGCTGACCCAGTCGTATTCTACCATCCTGCCCAAGGCGGATCAATCGAGTGGAGAGTACCCCGCGAAGCACCCCATATCTGATCAGGTCAAGTATGCGATCTTGGCGCAGCAGCTCAAGGCGAACAAGATCGAGGACAACGAACATTCCGAGGAGGAGCTGGTGATCGACGAGGGCCCGCAGGAGAAGGAGCAGGAATCTCAGAAGGAGAAGTGCACCAGTTTGTTGAGGGGCCAGTTAGAAGGATCAGAGGTTGTAAAAGAGATAAAAGAAGATGCCGAGAAATGCGTTAAAGAGGACACGACCGATAGACCCGAGTCTACGAACAGCAATAACGAGAACGAGAACGAGAACGAGAACGAGAAAGAGGACGAGGAGAAGATAGACGAGGCGGAGCCGTCGACGACGGAGATGAACGAATCGAGCGATAAGAAAACGATCAAGCCTGAACAGGAGGAAGAGAGGTCGGAGAAGGCTGAAGACGGTGCGACTGACTTGGCTAGCGTGTCGGAATTGTTGGACAATGCCTCGCAGCAATACCAGCAGTTCCAACCTCAGTATCTGAGCGACGAAGAAGGATTGGTCGCGTCGAACAGCGACTGCAACAACTCCGGCAGCGACGAGAAGTCGGACTCCGTGAACTCGTTGAACTCTGAAAGTCCCTCGTCGAAGAAGAAGAAGAAAAAAATGAAGAAGAAGTCCGCGTACTCGATGGCTCCGAACCGAGTGATCTGTCCGTACTGCGAGAGGCCGTTCCCTTGGACATCGTCTCTAAGAAGACACATTCTGACGCACACCGGACAGAAACCGTACCAGTGCATGCACTGTTCGCTGCTCTTCACCACCAAGTCGAACTGCGACCGCCATTTGCTGAGAAAGCACAAGGCGAACCCGAACAAGATCCGCAGGGTCCGAAACTCCTCGTCTCCGGACAGCCAAGCGGCGATCAGCAACAGCAACTCCTTCTCGATGAGGAACGTGCCCGAAAGGCCGTACAAGTGCAATCAATGCCCCAGCTCGACCTTCTCCACTTTGGGCAACCTGAAGAAGCATCGATCGACGAAGCACGCGCGAAAGGTCAAGTCCAGGTCCGACACCCCATCCAGCGAACCTCAGAACAGTCCTCAAGAATGCTCGAAACAGAACGAACAGACCGATTACGACAGCCAGTCGTCCAGCGTCTCCGAAAGCATGGAGATCGCTTCGGTGTCGGGACTACCAAAGACGAACTTGAACACCTTGCCGTCCACCAACGACGCGGCCAGGTCCAGAAGACCGTCACCGAGATCATCGCCTGGACCGAGCGACGTCCCGTTCAAGTGTCACCTGTGCGACTGCGGATTCTCCGACAGGCAGGATTGTCTGGAGCACATCAAAGTCAATCATAAAAGGTCGTACGAGATGCTGGTGGCTAAGGGAGCCCTGGACATGGATATCGACACCGTGGAGGATCAGCAGCCGCCTCCTTCTCAGCACCACAGCGACGGCGAAGAGAAGAGAGGCCGATTCCCTGACTACAGCAATAGAAAGGTGGTCTGCGCTTTCTGTATGAGGCGCTTCTGGTCTGCGGAGGACCTCCGTCGACACATGAGGACGCACACCGGCGAGAGACCGTTTTCCTGCGACATCTGCTGCAGGAGATTCACGCTGAAACACAGCATGCTGCGACACAGGAAGAAGCACGAGTCGGTGGACTCGACGATGTACGTAGGCACCAGCGGGGACGAAGAGAACGCGCCGACACAACCGCCTACCATCGCGCCGAGGAGTCAACAGCAACAATCGCCGGTTCTGGTAGCTACAAACTCTGGAAACCCTAGGATACAGGATAGAATATCGTTGCCAAACATGGCACCGGTTGTAACGGGGGATGCCGCGCCCAGCGGGCTCGTGCGTTTCCATCCGTACGAGAAGCTGACAACTTTGACGGGTAAGCTGGCTAGTATTCCGCAAAACGCGAATCCCGAAGCCAGCGAGAACACCGACACCGACCTAATCTCGAATCTATTGGGGATTAGGGATAAGACCTTTATGGACAGAGTGCTTCAAGCGACCGCCGACGACGCAGCCAAACTTCTCGGGGTGAAACACAGCCACGAGTGA
Protein Sequence: MADRKWTLRREEKITVKSSPDQGRDNEAQVDAASPLSSVELPESAHPCPACPTVLPSCRELTHHLRDHNSPRSTDCSVEDDFSCGVCNKVLSSASSLDRHVLVHSGERPFKCKFCEMAFTTNGNMNRHLRTAHCSTSSLSCTDSEVSCDSEKLSKRNIEEYNNNEIAKRKSPDLIDQDQEKSPSLKRKCTEYLRDIENQKRHKILLNNSSRPEVKARPDDSQKVYNCPVCGRKNFGTSRLLESHLERCHPDFPPNCDPCDLSFGNCRVMNLHQYVLQYEDQPIGNTTRNLRNSVVGFNDLTFVDFSSEKFPTIARAVCEQSVHRPASGEVAKFQCSKCLRAFPCRLALDAHETDCGTVNAPTRVINDNQSRRDDFFAGLNLQNKAAMTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPENNIKFNLNLSSSGSSGTFSTESHEEEAQDAFSAEFRKMKLKGEFPCRLCTAIFPNLRALKGHNRAHMGVGPGQPYPCNMCSYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTTDNAERSSPRVIKDDPRKSLMFPNERDELQHQTQMRYPSVPMEGRSEIRIIEEAKLHNSLSLRNSRYENAEAFPMSSHQPMELTKNADDRKSVDAKQDYAKLEEDQESRSSAGSVSLVSDTKSESHQRIQASPMNLKKALTVSETVGEDGPLDLSMDVLDLSKKTKENEDGSCSASQDGYGKSQKEMYDAVKSRLLITQALLAKAGQGNPPPCSLDSLYANAHLIYGNFGAFPGTVGAGILPPYLFNPHVFGQDFTVKETLQKELVRGLQLTSGGTLVEPPIGTTGYNAYPQGRDMNPQTANEQNEYAKLITSKLTGKALANRDKPENHIPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCGHCSAKFTLRSNMERHIKQQHPQFWSQRPRGGHSTRGRPPSSHLTLLQSLEQSAAQLTQSYSTILPKADQSSGEYPAKHPISDQVKYAILAQQLKANKIEDNEHSEEELVIDEGPQEKEQESQKEKCTSLLRGQLEGSEVVKEIKEDAEKCVKEDTTDRPESTNSNNENENENENEKEDEEKIDEAEPSTTEMNESSDKKTIKPEQEEERSEKAEDGATDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSLNSESPSSKKKKKKMKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCMHCSLLFTTKSNCDRHLLRKHKANPNKIRRVRNSSSPDSQAAISNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKVKSRSDTPSSEPQNSPQECSKQNEQTDYDSQSSSVSESMEIASVSGLPKTNLNTLPSTNDAARSRRPSPRSSPGPSDVPFKCHLCDCGFSDRQDCLEHIKVNHKRSYEMLVAKGALDMDIDTVEDQQPPPSQHHSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESVDSTMYVGTSGDEENAPTQPPTIAPRSQQQQSPVLVATNSGNPRIQDRISLPNMAPVVTGDAAPSGLVRFHPYEKLTTLTGKLASIPQNANPEASENTDTDLISNLLGIRDKTFMDRVLQATADDAAKLLGVKHSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00866229;
90% Identity: iTF_00860633;
80% Identity: -