Basic Information

Insect: Lasioglossum zephyrum
Gene Symbol: Rreb1
Assembly: GCA_028455615.1
Location: CM052330.1:20136805-20143033[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.037 3.3 8.5 1.5 1 23 44 66 44 66 0.96

2 15 0.00023 0.02 15.5 0.7 1 23 80 102 80 102 0.97

3 15 3.8e-06 0.00033 21.1 1.3 1 23 108 131 108 131 0.98

4 15 0.013 1.1 10.0 1.2 1 23 222 246 222 246 0.96

5 15 9.7 8.4e+02 1.0 0.4 1 10 330 339 330 348 0.88

6 15 0.12 10 7.0 0.1 1 23 464 486 464 486 0.96

7 15 2.8e-05 0.0024 18.4 1.1 1 23 495 517 495 517 0.98

8 15 0.0012 0.11 13.2 2.8 1 23 523 546 523 546 0.97

9 15 0.00079 0.069 13.8 2.3 1 23 932 955 932 955 0.96

10 15 0.00064 0.056 14.1 0.1 3 23 1242 1262 1240 1262 0.97

11 15 0.89 78 4.2 6.5 1 23 1268 1291 1268 1291 0.97

12 15 0.004 0.35 11.6 2.2 1 23 1329 1353 1329 1353 0.97

13 15 0.64 56 4.7 5.5 1 23 1446 1469 1446 1469 0.93

14 15 0.011 0.95 10.2 0.4 2 23 1520 1541 1519 1541 0.94

15 15 1.3 1.1e+02 3.7 8.2 1 23 1547 1569 1547 1569 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.037	3.3	8.5	1.5	1	23	44	66	44	66	0.96
2	15	0.00023	0.02	15.5	0.7	1	23	80	102	80	102	0.97
3	15	3.8e-06	0.00033	21.1	1.3	1	23	108	131	108	131	0.98
4	15	0.013	1.1	10.0	1.2	1	23	222	246	222	246	0.96
5	15	9.7	8.4e+02	1.0	0.4	1	10	330	339	330	348	0.88
6	15	0.12	10	7.0	0.1	1	23	464	486	464	486	0.96
7	15	2.8e-05	0.0024	18.4	1.1	1	23	495	517	495	517	0.98
8	15	0.0012	0.11	13.2	2.8	1	23	523	546	523	546	0.97
9	15	0.00079	0.069	13.8	2.3	1	23	932	955	932	955	0.96
10	15	0.00064	0.056	14.1	0.1	3	23	1242	1262	1240	1262	0.97
11	15	0.89	78	4.2	6.5	1	23	1268	1291	1268	1291	0.97
12	15	0.004	0.35	11.6	2.2	1	23	1329	1353	1329	1353	0.97
13	15	0.64	56	4.7	5.5	1	23	1446	1469	1446	1469	0.93
14	15	0.011	0.95	10.2	0.4	2	23	1520	1541	1519	1541	0.94
15	15	1.3	1.1e+02	3.7	8.2	1	23	1547	1569	1547	1569	0.98

Sequence Information

Coding Sequence: ATGTCAGTGCTAATCTATTCCTATTTTGTTTCAGTTACTGTCAAGAGTAGCCCCGAACAGGGACGCGACAACGAAGCTCAAGTTGACGCAGCATCACCACTCTCAAGTGTGGAGTTACCGGAAAGCGCTCACCCCTGCCCAGCGTGCCCCACAGTGCTGCCTAGCTGCCGTGAGCTGACGCACCACCTGCGCGACCACAACTCTCCGCGCAGCACCGATTGCAGCGTCGAGGACGATTTCTGTTGCACCGTTTGCAACAAGGTGCTCAGCTCGGCGAGCTCTTTGGACAGACACGTGTTGGTGCACTCCGGAGAACGACCGTTCAAATGCAAATTCTGCGAGATGGCGTTCACGACGAACGGAAACATGAACAGACACCTGCGAACAGCGCACTGTTCAACCTCCTCGCTGAGTTGCACGGACTCGGAAGGTAGTTGCGACTCCGAGAAACTGTCGAAGAGGAACATCGAGGAGTACAACAACAACGAGATCGCGAAAAGAAAATCGCCGGACTTGATCGACCAAGACCAGGAGAAGAGTCCCAGTCTGAAGAGAAAGTGCACGGAGTATCTGCGCGACATCGAGAACCAGAAGAGACACAAGATTCTCTTAAACAACTCGCGGCCCGAGGTCAAGGCCAGACCCGACGACAGCCAGAAAGCGTACAACTGTCCGGTATGCGGGAGGAAAAACTTCGGGACCAGCCGGCTTCTGGAGAGTCACCTGGAGCGCTGCCACCCGGACTTCGTGCCGAACTGCGATCCCTGCGATCTGTCCTTCGGTAACTGCCGGGTGATGAACCTGCACCAGTACATGCTGCAGTACGAGGACCAACCGACCGGGAACACCACGAGGAACCTGCGCAACTCCGTGGTCGGCTTCAACGATCTGACCTTCGTCGACTTCTCCTCGGAAAAATTCCCGACGATCGCGCGGGCGGTCTGCGAGCAATCGGTTCATCGGCCTGCCTCGGGAGAGGTCGCCAAGTTCCAGTGCTCCAAGTGTCTGAGGGCGTTCCCCTGCAGATTAGCCTTGGACGCTCACGAAAGCGACTGCGGCACGGTGAACGCTCCGCTCAGGGTGATGAACGACAGCCAGTCGAGGAGAGACGACTTCTTCGCCGGGCTGAATCTGCAGAACAAGGCTGCCATGACCGAGGCGAAAGAGGGCAAAGATCTGGCCGATATCCAGAGCATCATCTCCGTCACCTCCGGCCCCATCCTGCAGAACTTCCCCAGGTCGGACGCCAGCACTCCCGAGAACAACATCAAGTTCAACGTGAATCTTAGTTCATCGGGCTCCTCCGGCACCTTCTCCACTGAGTCCCACGAGGAGGAGATGCAGGACGTATTTTCAGCCGAGTTCAGGAAGATGAAACTGAAGGGCGAATTCCCCTGCAGACTGTGCAAAGCGATCTTCCCGAACCTGAGAGCGTTGAAGGGCCACAACAGGGCGCACATGGGGGTTGCGCCTGGTCAGCCGTACCCCTGCAATATGTGTTCGTACACGAGCACAGACAAAGGTACCCTGACCAGACACCTGAGATCCCACAACGGAGATAGGCCTTACGAGTGCTCGTTGTGCAACTACGCTTTCACGACGAAGGCGAACTGCGAGCGACACGTGAGAAACAGGCACGGGAAGCTCACCCGAGAGGACATCAAGAGCGTTCTGATCTATCATCCGAGCGAGGACTCGACGACAGAAAACGCGGAGAGAAGCTCGCCCAGAGTGATCAAAGACGATCCGAGGAAAAGCTTGATGTATCCTAACGAGCGCGACGAGCTGCATCATCAGACGCTGCGATATCCATCGGTACCGATGGAGGGCCGCAGCGAGATCAGGATCATCGAGGAGGCGAAGCTGCACAATTCGTTGTCCCTGCGCCACAACGCTCGCTACGAGAATGCCGAAGCATTCCCGATGTCGAGCCACCAACCGATAGAGTTAACGAGGAATGCGGACGATGGGAAGTCCGTAGACACGAAGCAGGAGTACGCGCAGCAGGACTACGCGAAGCTCGAGGAGGACCTGGAGTCGAGATCCTCGGTAGACAGCGTGTCTCTAGTCAGTGATACCAAATCCGAATCACACCAAAGAATACAAGCTAGTCCGATGAACCTGAAGAAGGCTCTGACGGTATCGGAGACTGTCGGCGAGGACGGTCCTCTGGATCTATCCATGGACGTTCTAGATCTCAGTAAGAAGACGAAGGGAAACGAGGATGGCAATTGCTCGGCCTCGCAGGATGGCTACGGTAAGAGCCAGAAGGAGATGTACGATGCCGTGAAGAGTCGGCTATTGATCACACAGGCCCTGCTAAAGGCTGGTCAGGGCAATCCACCGCCTTGTTCCCTGGATACGCTTTACGCGAACGCTCAGCTGATCTACGGAAACTTTGGATCGTTCCCCGGAACCGTGGGACCGGGAATATTGCCACCGTACTTGTTCAACCCCCACGTGTTCGGTCAGGATTTCACCGTGAAAGAGACACTGCAGAAGGAGTTGGTCAGGGGTCTGCAGCTGACCAGCGGTGGAACCTTGGTGGAGCCTCCGATCGGGACCACCACCGGGTACAATGCCTATCCTCCTGCAAGAGACATGAACCCGCAAACGGCGAACGAACAGAACGAATACGCCAAGCTGATCACATCGAAGTTGACCGGCAAGGTGCTAGCTAACCGAGAGAAACCCGAGAACCACGTGCCCTCGTCGAACTCTGTGAAAATGGTGATTAAAAACGGCGTGCTGATGCCCAAGCAGAAACAGAGACGGTACAGAACCGAGAGACCATTCATCTGCGAACATTGCTCCGCGAAATTCACCTTGCGTAGCAACATGGAGAGGCACATTAAGCAGCAGCATCCTGACTTCTGGAGCCAAAGACCCAGAGGAGGACACTCGACCAGGGGAAGACCTCCTTCCAGCCATCTGACGTTGCTGCAGAGTTTGGAGCAATCGGCGGCCCAGCTGACCCAGTCGTATTCCACCATTTTGCCCAAGGCGGATCAATCGAGCGCAGAGTACCCCACTGCGAAGCATCCCATATCGGATCAGGTGAAATACGCGATCTTGGCGCAGCAGCTCAAGGCGAACAAGATCGAGGACAACGAACATTCCGAGGAGGAGCTGGTGATCGACGAGGGTCCGCAGGAGAAGGAGCAGGAATCTCAGAAGGAGAAGCGCACCAGTTTGTTGAGGGGCCAGTTGGAAGGATCAGAGGTCGCGAAAGAGATCAAAGAAGACGCTCAGAAATGCGATAAAGAGGTCGCGAAGGAGGACGTTAAAGACGACACGACCAATACCGAGACCTCGAACAGCAACAACGAGAAAGAGGACGAGGACAAGATGACTGACAGGACGACGGACAAGACGGACAAGGAACCGTCGTCGGAGATGAACGAGTCGAGCGACGTCGACAAGAAAACGATCAAGCCTGAACAGGAGGAAGAGAAGGCGGAGAAGGCCGAAGACGCTGCTACCGACTTGGCCAGCGTGTCGGAATTGTTGGACAACGCCTCGCAGCAGTACCAACAGTTCCAACCTCAGTATCTGAGCGACGAAGAAGGGTTGGTCGCATCGAACAGCGACTGCAACAACTCCGGCAGCGACGAGAAGTCGGACTCGGTGAACTCGTTCAACTCCGAGACTGCCTCGTCCAAGAAAAAGAAGAAGAAAATGAAGAAGAAGTCCGCGTACTCGATGGCCCCGAACCGAGTGATCTGTCCGTACTGCGAGAGGCCGTTCCCCTGGACATCGTCGCTCAGAAGACATATTCTGACGCACACCGGACAGAAGCCGTACCAGTGTATGCACTGTTCGCTGCTCTTCACGACCAAGTCGAACTGCGACCGCCATTTGCTGAGAAAGCACAAGGCGAACCCGAACAAGATACGCAGGGTCCGAAACTCCTCGTCGCCGGACAGCCAAGCGGCGATCAGCAACAGCAATTCCTTCTCGATGAGGAACGTGCCCGAGAGGCCGTACAAGTGCAATCAGTGTCCCAGCTCGACCTTCTCCACTTTGGGCAACCTGAAGAAGCATCGTTCGACGAAGCACGCGCGAAAGGTCAAGTCCAGGTCCGACACCCCGTCCAGCGAACCTCAAAACAGTCCGCAAGAATGCTCGAAACAGAACGAACAAAACGAGCAAAACGAACAGAACGAACAGACCGACTACGACAGCCAGTCGTCCAGCGTCTCCGAAAACATGGAGACCGCTTCGGTGTCGGGACTATCCAAGTCGACGAACCTGAACACCTTGCCGTCCACCAACGACGCGCCCAGGTCCAGGAGACCTTCTCCGAGGTCGTCGCCCGGGCCGAGCGACGTACCGTTCAAGTGTCACCTGTGCGACTGCGGATTCTCCGACAGGCAGGATTGTCTCGAGCACATCAAAGCCAATCATAAAAGATCGTATGAGATGCTGGTGGCTAAGGGAGCTCTGGACATGGACATCGACACCGTAGAGGACCAGCAACAGCCGCCTCCTTCTCAGCATCACAGCGACGGCGAAGAGAAGAGAGGTCGATTCCCTGACTACAGCAATAGAAAGGTGGTCTGTGCTTTCTGTATGAGGCGTTTCTGGTCCGCGGAGGATCTCCGTCGACACATGAGGACACACACCGGCGAGAGACCGTTTTCCTGCGACATCTGCTGCAGGAGATTCACGCTGAAGCACAGCATGCTGCGACACAGGAAGAAGCACGAGTCGATAGACTCGACGATGTACGTGGGCACCAGCGGGGACGAAGAGAACGCGCCGACACAACCAGCTACCATCGCGCCGAGAACACAACAGCAACAAGCACCGGTTCTGCTAGCTGCGAACTCTGGAAACCCAAGGATACAGGACAGAATATCGTTGCCAAACATGGCACCGGTTGTAACGGGGGATGCTGCGCCTAGCGGACTCGCGCGTTTCCATCCCTACGAGAAGCTGACAACGTTGACGGGTAAGCTGGCTAGTATTCCGCAAAACGCGAATCCCGAAGCCAGCGAGAACACCGATAACGATCTAATCTCGAATCTATTGGGGATCAGGGATAAGACGTTTATAGACAGAGTGCTTCAATCGACCCCCGACGACGCAGCCAAACTTCTCGGGGTGCAACACAGCCACGAGTGA
Protein Sequence: MSVLIYSYFVSVTVKSSPEQGRDNEAQVDAASPLSSVELPESAHPCPACPTVLPSCRELTHHLRDHNSPRSTDCSVEDDFCCTVCNKVLSSASSLDRHVLVHSGERPFKCKFCEMAFTTNGNMNRHLRTAHCSTSSLSCTDSEGSCDSEKLSKRNIEEYNNNEIAKRKSPDLIDQDQEKSPSLKRKCTEYLRDIENQKRHKILLNNSRPEVKARPDDSQKAYNCPVCGRKNFGTSRLLESHLERCHPDFVPNCDPCDLSFGNCRVMNLHQYMLQYEDQPTGNTTRNLRNSVVGFNDLTFVDFSSEKFPTIARAVCEQSVHRPASGEVAKFQCSKCLRAFPCRLALDAHESDCGTVNAPLRVMNDSQSRRDDFFAGLNLQNKAAMTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPENNIKFNVNLSSSGSSGTFSTESHEEEMQDVFSAEFRKMKLKGEFPCRLCKAIFPNLRALKGHNRAHMGVAPGQPYPCNMCSYTSTDKGTLTRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPSEDSTTENAERSSPRVIKDDPRKSLMYPNERDELHHQTLRYPSVPMEGRSEIRIIEEAKLHNSLSLRHNARYENAEAFPMSSHQPIELTRNADDGKSVDTKQEYAQQDYAKLEEDLESRSSVDSVSLVSDTKSESHQRIQASPMNLKKALTVSETVGEDGPLDLSMDVLDLSKKTKGNEDGNCSASQDGYGKSQKEMYDAVKSRLLITQALLKAGQGNPPPCSLDTLYANAQLIYGNFGSFPGTVGPGILPPYLFNPHVFGQDFTVKETLQKELVRGLQLTSGGTLVEPPIGTTTGYNAYPPARDMNPQTANEQNEYAKLITSKLTGKVLANREKPENHVPSSNSVKMVIKNGVLMPKQKQRRYRTERPFICEHCSAKFTLRSNMERHIKQQHPDFWSQRPRGGHSTRGRPPSSHLTLLQSLEQSAAQLTQSYSTILPKADQSSAEYPTAKHPISDQVKYAILAQQLKANKIEDNEHSEEELVIDEGPQEKEQESQKEKRTSLLRGQLEGSEVAKEIKEDAQKCDKEVAKEDVKDDTTNTETSNSNNEKEDEDKMTDRTTDKTDKEPSSEMNESSDVDKKTIKPEQEEEKAEKAEDAATDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSFNSETASSKKKKKKMKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCMHCSLLFTTKSNCDRHLLRKHKANPNKIRRVRNSSSPDSQAAISNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKVKSRSDTPSSEPQNSPQECSKQNEQNEQNEQNEQTDYDSQSSSVSENMETASVSGLSKSTNLNTLPSTNDAPRSRRPSPRSSPGPSDVPFKCHLCDCGFSDRQDCLEHIKANHKRSYEMLVAKGALDMDIDTVEDQQQPPPSQHHSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENAPTQPATIAPRTQQQQAPVLLAANSGNPRIQDRISLPNMAPVVTGDAAPSGLARFHPYEKLTTLTGKLASIPQNANPEASENTDNDLISNLLGIRDKTFIDRVLQSTPDDAAKLLGVQHSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00866229;
90% Identity: iTF_00860633;
80% Identity: -