Basic Information

Insect: Lasioglossum calceatum
Gene Symbol: RREB1
Assembly: GCA_963966675.1
Location: OZ016549.1:15157978-15163972[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.04 4.4 8.6 1.5 1 23 48 70 48 70 0.96

2 14 0.00023 0.025 15.6 0.1 1 23 84 106 84 106 0.97

3 14 4e-06 0.00044 21.1 1.3 1 23 112 135 112 135 0.98

4 14 0.014 1.5 10.0 1.2 1 23 226 250 226 250 0.96

5 14 0.2 22 6.4 0.1 1 23 469 491 469 491 0.96

6 14 7.3e-05 0.0079 17.2 0.6 1 23 500 522 500 522 0.98

7 14 0.0013 0.14 13.3 2.8 1 23 528 551 528 551 0.97

8 14 0.00095 0.1 13.7 2.8 1 23 933 956 933 956 0.97

9 14 0.00068 0.075 14.1 0.1 3 23 1231 1251 1229 1251 0.97

10 14 0.95 1e+02 4.2 6.5 1 23 1257 1280 1257 1280 0.97

11 14 0.0043 0.47 11.6 2.2 1 23 1319 1343 1319 1343 0.97

12 14 0.33 36 5.7 5.7 1 23 1426 1449 1426 1449 0.96

13 14 0.012 1.3 10.3 0.4 2 23 1500 1521 1499 1521 0.94

14 14 1.4 1.5e+02 3.7 8.2 1 23 1527 1549 1527 1549 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.04	4.4	8.6	1.5	1	23	48	70	48	70	0.96
2	14	0.00023	0.025	15.6	0.1	1	23	84	106	84	106	0.97
3	14	4e-06	0.00044	21.1	1.3	1	23	112	135	112	135	0.98
4	14	0.014	1.5	10.0	1.2	1	23	226	250	226	250	0.96
5	14	0.2	22	6.4	0.1	1	23	469	491	469	491	0.96
6	14	7.3e-05	0.0079	17.2	0.6	1	23	500	522	500	522	0.98
7	14	0.0013	0.14	13.3	2.8	1	23	528	551	528	551	0.97
8	14	0.00095	0.1	13.7	2.8	1	23	933	956	933	956	0.97
9	14	0.00068	0.075	14.1	0.1	3	23	1231	1251	1229	1251	0.97
10	14	0.95	1e+02	4.2	6.5	1	23	1257	1280	1257	1280	0.97
11	14	0.0043	0.47	11.6	2.2	1	23	1319	1343	1319	1343	0.97
12	14	0.33	36	5.7	5.7	1	23	1426	1449	1426	1449	0.96
13	14	0.012	1.3	10.3	0.4	2	23	1500	1521	1499	1521	0.94
14	14	1.4	1.5e+02	3.7	8.2	1	23	1527	1549	1527	1549	0.98

Sequence Information

Coding Sequence: ATGTCCCTCTCGATTCCAGTGCTAATCTTTTCCTATTTTGTTTCAGTTACTGTCAAGAGTAGCCCCGATCAGGGCCGCGACAACGAAGCCCAAGTTGATGCAGCATCGCCACTCTCGAGTGTGGAGTTACCGGAAAGCGCTCACCCCTGTCCCGCGTGCCCCACGGTGCTGCCTAGCTGCCGAGAGCTGACACACCACCTGCGCGACCACAACTCTCCGCGCAGCACCGATTGCAGCGTCGAGGACGATTTCAGTTGCGGCGTTTGCAACAAGGTGCTGAGCTCCGCGAGCTCTTTGGACAGACACGTGCTGGTGCACTCCGGTGAACGACCGTTCAAATGCAAATTCTGCGAGATGGCGTTCACGACAAACGGAAACATGAACAGACACCTGCGGACAGCGCACTGTTCAACCTCTTCGCTCAGTTGCACGGACTCGGAAGTTAGTTGCGACTCCGAGAAACTGTCGAAGAGGAACGTCGAGGAGTACAACAACAACGAGATCGCGAAAAGGAAATCGCCGGACTTGATCGAGGAAGACCAGGGCAAGAGTCCCAGTCTGAAGCGAAAGTGCACGGACTATCTGCGCGACATCGAAAACCAGAAGAGACACAAGATCCTGCTGAACAACTCGCGGCCCGAGGTCAAGGCCAGACCCGACGACAGCCAGAAAGTGTACAATTGTCCCGTGTGCGGGAGGAAAAACTTCGGGACCAGCCGGCTCCTGGAGAGTCACCTGGAGCGTTGCCACCCGGACTTCCCGCCGAACTGCGACCCCTGCGACCTGTCCTTCGGTAACTGCCGGGTGATGAACCTGCATCAATACGTGCTCCAGTACGAGGACCAACCGACCGGGAACAACACCACGAGGAACCTGCGCAACTCCGTGGTCGGCTTCAACGACCTGACCTTCGTCGACTTCTCCTCGGAAAAATTCCCGACGATCGCTCGGGCGGTCTGCGAGCAATCGCTTCATCGGCCTGCCTCGGGAGAGGTCGCCAAGTTCCAGTGCTCCAAGTGTCTGAGGGCGTTCCCCTGTAGATTAGCGTTGGACGCTCACGAAAGCGATTGCGGCACGGTGAACGCTCCGACCAGGGTGATCAACGACAACCAGTCGAGGAGAGACGATTTCTTCGCCGGCCTGAACCTGCAGAACAAGGCTGCCATGACAGAGGCGAAAGAGGGCAAGGATCTGGCCGATATTCAGAGCATCATCTCCGTCACCTCCGGTCCCATCCTGCAGAACTTCCCCAGGTCGGACGCCAGCACTCCCGAGAACAACATCAAGTTCAACTTGAATCTTAGCTCTTCGGGCTCCTCCGGCACCTTCTCCACCGAGTCGCACGAAGAGGAGGCGCAGGACGCGTTTTCGGCCGAATTCAGGAAGATGAAACTGAAGGGTGAATTTCCCTGTAGACTGTGCACCGCGATCTTCCCGAACCTGAGAGCGCTGAAGGGCCACAACAGGGCGCACATGGGAGTCGGACCTGGCCAGCCGTACCCTTGCAATATGTGTTCCTACACGAGCACGGACAAAGCTACCTTGGTGAGACACCTGAGGTCCCACAACGGCGACAGGCCTTACGAGTGCTCGTTGTGTAACTACGCGTTCACAACGAAGGCGAATTGCGAGCGGCACGTGAGGAACAGGCACGGGAAGCTCACCAGGGAGGACATCAAGAGCGTTCTGATCTATCATCCGAACGAGGACTCGACAACCGACAACGCGGAGAGAAGCTCGCCCAGAGTGATGAAAGATGACCCGAGGAAATCTTTGATGTACCCTAACGAGCGGGACGAGCTGCATCATCAGACGCAGATGCGTTATCCGTCGGTACCGATGGAGGGCCGCAGCGAGATCAGGATCATCGAGGAGGCGAAGCTGCATAACTCGTTGTCCCTGCGCAACAGTCGCTACGAGAATGCCGAGGCGTTCCCGATGTCGAGCCACCAGCCGATTGAGTTGACGAAGAACGCGGACGATGGAAAGTCCGTGGACGCGAAGCAGGACTACGCGAAGCTCGAGGAGGACCAGGAGTCGAGGTCCTCGGCAGGCAGCGTGTCTCTAGTCAGTGATACCAAATCCGAATCGCACCAAAGAATTCAAGCTAGTCCGATGAACCTGAAGAAGGCTCTGACGGTATCGGAGACTGTCGGCGACGACGGTCCTCTGGATCTATCGATGGATGTTCTAGATCTCAGTAAGAAGACGAAGGGAAACGAGGATGGCAATTGCTCGGCCTCGCAAGATGGCTACGGGAAGAGCCAGAAGGAGATGTACGATGCTGTGAAAAGTCGACTATTGATCACCCAGGCCCTGCTGAAGGCTGGCCAGGGGAACCCGCCGCCTTGTTCCCTGGATACGCTTTACGCGAATGCTCAGCTGATTTACGGAAACTTCGGAGCGTTCCCCGGAACCGTGGGAGCGGCGGGAATATTGCCACCGTACTTGTTCAACCCGCATGTGTTCGGTCAGGACTTCACCGTGAAAGAGACGCTGCAGAAGGAGTTGGTCAGGGGCCTGCAGCTGACCAGCGGCGGCACGTTGGTGGAGCCCCCGATCGGGACCACCGGGTACAACGCCTATCCTCAAGGAAGAGACATGAATCCGCAAACGGCGAGCGAACAGAACGAGTACGCCAAGCTGATCACGTCAAAGCTAACGGGTAAGGCGCTAGCTAATCGAGATAAACCCGAGAACAACCACATACCCTCGTCGAACTCTGTGAAAATGGTGATAAAAAACGGCGTGCTGATGCCCAAGCAGAAGCAGAGACGATACAGAACTGAGAGACCTTTCACTTGCGGACATTGCTCCGCGAAATTCACCTTGCGGAGCAACATGGAGAGACACATTAAACAGCAGCATCCTCAGTTCTGGAGCCAAAGACCCAGAGGAGGACACTCGACCAGGGGAAGACCTCCTTCGAGCCATCTGACTTTGTTGCAGAGTTTGGAGCAATCGGCGGCCCAGCTGACCCAGTCGTATTCCACCATCCTGCCCAAGGCGGCGGATCAATCGAGTGGAGAGTACCCCGCGAAGCACCCCATATCGGATCAGGTGAAGTATGCGATCCTGGCGCAGCAGCTCAAGGCGAACAAGATCGAGGACAACGAACATTCCGAGGAGGAGCTGGTGATCGACGAGGGTCCGCAGGAGAAGGAGCAGGAATCTCAGAAGGAGAAGTGCACCAGTTTGTTGAGGGGCCAGTTGGAAGGATCAGAGGTCGCAAAAGAGACAAAAGAAAATGCCGAGAAATACGTTAAAGAGGAACTTACCCCGACCAATACCACCACCGAGTCCACGAACAGCAATCACGAGAAAGAGGACGAGGAGAAGACGGACGCGGCGGAACCGTCGACGGAGATGAACGACGAGTCGTGCGATAAGAAAACGATCAAGCCTGAACAGGAGGAAGAGAGGTCGGAGAAGGCTGAAGACGGTGCGACTGACTTGGCTAGCGTGTCGGAATTGTTGGACAATGCCTCGCAACAGTACCAGCAGTTCCAACCTCAGTATCTGAGCGACGAGGAAGGATTGGTCGCATCGAACAGCGACTGCAACAACTCTGGCAGCGACGAGAAGTCGGACTCCGTGAACTCGTTGAACTCCGAGAGTCCGTTgtccaagaagaagaagaaaaaaatgaagAAGAAGTCCGCGTACTCGATGGCTCCGAACCGAGTGATCTGTCCGTACTGCGAGAGGCCGTTCCCCTGGACATCGTCTCTGAGAAGACATATTCTGACGCACACCGGACAGAAACCGTACCAGTGCATGCACTGTTCGCTGCTCTTCACGACCAAGTCGAACTGCGACCGCCATTTGCTGAGAAAGCACAAGGCGAACCCGAACAAGATCCGCAGGGTCCGGAACTCCTCGTCGCCGGACAGTCAAGCGGCGATCGGCAACAGCAACAACTCCTTTTCGATGAGGAACGTGCCCGAACGGCCGTACAAGTGCAATCAATGCCCCAGCTCGACCTTCTCCACTTTGGGCAATCTGAAGAAGCATCGCTCGACGAAGCACGCGCGAAAGGCCAAGTCCAGGTCCGACACCCCATCCAGCGAACCTCAGAACAGTCCTCAAGAATGCTCGAAACAGAACGAACAGACCGATTACGACAGCCAGTCGTCCAGCGTCTCCGAAAGCATGGAGACCGCTTCGGTGTCGGGACTACCAAAGACGAACTTGAACACCTTGCCGTCCACCAATGACGCGCCCAGGTCCAGAAGACCTTCTCCGAGGTCATCGCCGGGACCAAGCGACGTCCCGTTCAAGTGTCACCTGTGCGACTGCGGATTCTCCGACAGGCAGGACTGTCTGGAGCACATCAAAGTAAATCATAAAAGGTCGTACGAGATGCTGGTGGCTAAGGGAGCCCTGGACATGGATATCGACACCGTGGAGGACCAGCAACAGCCGCCTCCTTCTCAGCATCACAGCGACGGCGAAGAGAAGAGAGGCCGATTCCCCGACTACAGCAACAGAAAGGTGGTCTGCGCTTTCTGTATGAGGCGCTTCTGGTCTGCGGAGGACCTCCGTCGACACATGAGGACACACACCGGCGAGAGACCGTTCTCCTGCGACATCTGCTGCAGGAGATTCACGCTGAAGCACAGCATGCTGCGACACAGGAAGAAGCACGAGTCGGTGGACTCGACGATGTACGTAGGCACCAGCGGGGACGAAGAGAACGCGCCGACGCAACAACCACCTACCATCGCGCCGAGGAGTCAACAGCAACAATCACCGGTTCTGGTAGCTACAAACTCTGGAAACCCTAGGATACAGGATAGAATATCGTTGCCAAACATGGCGCCGGTTGTAACGGGGGATGCCGCGCCCAGCGGGCTCGCGCGTTTCCATCCCTACGAGAAGCTGACGACTTTGACGGGTAAGCTGGCTAGCATTCCGCAAAACGCGAATCCCGAAGCCAGCGAGAACACCGACAACGACCTAATCTCGAATCTATTGGGGATTAGGGATAAGACCTTTATAGACAGAGTGCTTCAAGCGACCGCCGACGACGCAGCCAAACTTCTCGGGGTGAAACACAGCCACGAGTGA
Protein Sequence: MSLSIPVLIFSYFVSVTVKSSPDQGRDNEAQVDAASPLSSVELPESAHPCPACPTVLPSCRELTHHLRDHNSPRSTDCSVEDDFSCGVCNKVLSSASSLDRHVLVHSGERPFKCKFCEMAFTTNGNMNRHLRTAHCSTSSLSCTDSEVSCDSEKLSKRNVEEYNNNEIAKRKSPDLIEEDQGKSPSLKRKCTDYLRDIENQKRHKILLNNSRPEVKARPDDSQKVYNCPVCGRKNFGTSRLLESHLERCHPDFPPNCDPCDLSFGNCRVMNLHQYVLQYEDQPTGNNTTRNLRNSVVGFNDLTFVDFSSEKFPTIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRLALDAHESDCGTVNAPTRVINDNQSRRDDFFAGLNLQNKAAMTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPENNIKFNLNLSSSGSSGTFSTESHEEEAQDAFSAEFRKMKLKGEFPCRLCTAIFPNLRALKGHNRAHMGVGPGQPYPCNMCSYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTTDNAERSSPRVMKDDPRKSLMYPNERDELHHQTQMRYPSVPMEGRSEIRIIEEAKLHNSLSLRNSRYENAEAFPMSSHQPIELTKNADDGKSVDAKQDYAKLEEDQESRSSAGSVSLVSDTKSESHQRIQASPMNLKKALTVSETVGDDGPLDLSMDVLDLSKKTKGNEDGNCSASQDGYGKSQKEMYDAVKSRLLITQALLKAGQGNPPPCSLDTLYANAQLIYGNFGAFPGTVGAAGILPPYLFNPHVFGQDFTVKETLQKELVRGLQLTSGGTLVEPPIGTTGYNAYPQGRDMNPQTASEQNEYAKLITSKLTGKALANRDKPENNHIPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCGHCSAKFTLRSNMERHIKQQHPQFWSQRPRGGHSTRGRPPSSHLTLLQSLEQSAAQLTQSYSTILPKAADQSSGEYPAKHPISDQVKYAILAQQLKANKIEDNEHSEEELVIDEGPQEKEQESQKEKCTSLLRGQLEGSEVAKETKENAEKYVKEELTPTNTTTESTNSNHEKEDEEKTDAAEPSTEMNDESCDKKTIKPEQEEERSEKAEDGATDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSLNSESPLSKKKKKKMKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCMHCSLLFTTKSNCDRHLLRKHKANPNKIRRVRNSSSPDSQAAIGNSNNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKAKSRSDTPSSEPQNSPQECSKQNEQTDYDSQSSSVSESMETASVSGLPKTNLNTLPSTNDAPRSRRPSPRSSPGPSDVPFKCHLCDCGFSDRQDCLEHIKVNHKRSYEMLVAKGALDMDIDTVEDQQQPPPSQHHSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESVDSTMYVGTSGDEENAPTQQPPTIAPRSQQQQSPVLVATNSGNPRIQDRISLPNMAPVVTGDAAPSGLARFHPYEKLTTLTGKLASIPQNANPEASENTDNDLISNLLGIRDKTFIDRVLQATADDAAKLLGVKHSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00866229;
90% Identity: iTF_00860633;
80% Identity: -