Loen007353.1
Basic Information
- Insect
- Lasioglossum oenotherae
- Gene Symbol
- Sry-delta
- Assembly
- GCA_028455765.1
- Location
- CM052282.1:3213062-3214765[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-11 2.4e-08 33.7 0.1 8 38 48 77 43 83 0.87 2 2 2.8 5.5e+03 -2.7 0.0 30 38 106 114 106 118 0.84
Sequence Information
- Coding Sequence
- ATGATTCCTTGTTCGATCACTCTGTTAGTAGCCAACGGGAACAATATACGATCGTTCCGTGAAAGATCGCATTTTCAAGACGGAAGATCAAGATCTTACAGGAAGAGGTACGGCAAGTGCGAGCTGGAACACGTGAAGACAGCTGTCGAAGCTGTTGCGAATGGCCTGTCGTTGAGGAAAGCGGCGAAGATCTTCTGCATATCGAAATCCGTTCTCCACCGGTATAGCAAACAAGAAGGGAGGTCGTCGGGAGGGTTCCTGATCAACCAGAGGGTGACCtatccgtgcaagaactgcggcaaggtgtacaattattactcgagcttggcgaggcacctgaaacacgagtgcggtgtcgagccgaagttccattgtccgttgtgcccgtacaagacgaagcacaagtccagtctgaacacccatttgaacggaagacacaTGAAACTGCTGAGCGAGTTCTACGCGATGCCGAACGGAAACAAACTGTCATCCTCCATGGACGCGGGGAACTAG
- Protein Sequence
- MIPCSITLLVANGNNIRSFRERSHFQDGRSRSYRKRYGKCELEHVKTAVEAVANGLSLRKAAKIFCISKSVLHRYSKQEGRSSGGFLINQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYKTKHKSSLNTHLNGRHMKLLSEFYAMPNGNKLSSSMDAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00864967; iTF_00863874; iTF_00762886; iTF_00762473; iTF_00864277; iTF_00863577; iTF_00863194; iTF_00861531; iTF_00861053;
- 90% Identity
- iTF_00864967; iTF_00861053; iTF_00861531; iTF_00863874; iTF_00864277; iTF_00863577; iTF_00863194;
- 80% Identity
- iTF_00864967;