Lmal007819.1
Basic Information
- Insect
- Lasioglossum malachurum
- Gene Symbol
- Sry-delta
- Assembly
- GCA_028455605.1
- Location
- CM052312.1:3162997-3165187[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-12 7e-09 35.3 0.0 8 41 30 63 25 67 0.85 2 2 3.5 5e+03 -2.6 0.0 30 38 102 110 102 114 0.84
Sequence Information
- Coding Sequence
- ATGATGAGAAGATCGCATTTTCAAGACGGAAGATCAAGATCTTACAGGAAGAGGTACGGCAAGTGCAACCTGGAACACGTGAAGACGGCTGTCGAAGCTGTGGCGAATGGCCTGTCGTTGAGGAAAGCAGCGAAGATCTTCTGCATATCGAAATCCGTTCTCCACCGATATAGCAAACAAGGGATACCGGTTCTGATGGAGAAATTCTTGCAGGAGGATTTCGAAGGGAGGACGTCGGGAGGGTTCCTGCTGAACCAGAGGGTGACCtatccgtgcaagaactgcggcaaggtgtacaattattactcgagcttggcgaggcacctgaagcacgagtgcggtgtcgagccgaagttccattgtccgttgtgcccgtacaagacgaagcacaagtccagtctgaacacccatttgaacggaagacacaTGAAACTGCTGAGCGAGTTCTACGCGATGCCGAACGGAAACAAACTGTCATCCTCCATGGACGCGGGGAACTAG
- Protein Sequence
- MMRRSHFQDGRSRSYRKRYGKCNLEHVKTAVEAVANGLSLRKAAKIFCISKSVLHRYSKQGIPVLMEKFLQEDFEGRTSGGFLLNQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYKTKHKSSLNTHLNGRHMKLLSEFYAMPNGNKLSSSMDAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00864561;
- 90% Identity
- iTF_00864561;
- 80% Identity
- iTF_00863577;