Lcal022869.1
Basic Information
- Insect
- Lasioglossum calceatum
- Gene Symbol
- Sry-delta
- Assembly
- GCA_963966675.1
- Location
- OZ016554.1:2036597-2038295[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-12 1.4e-08 34.9 0.0 8 40 48 80 43 84 0.84 2 2 5.5 8.5e+03 -2.8 0.0 30 38 120 128 120 132 0.84
Sequence Information
- Coding Sequence
- ATGATTCCTTGTTCGATCACTCTGTTAGTAGCCAACGGGAACAATATACGATCGTTCCGTGAAAGATCGCATTTTCAAGACGGAAGATCAAGATCTTACAGGAAGAGGTACGGCAAGTGCGAGCTGGAACACGTGAAGACGGCTGTCGAAGCTGTAGCGAATGGCCTGTCGTTGAGGAAAGCAGCGAAGATCTTCTGCATATCGAAATCCGTTCTCCACCGGTATAGCAAACAAGGGATACCGGTTCTGATGGAGAAATTCTCGCAGGAGGATTTCGAAGGGAGGACGTCGGGAGGGTTCCTGATCAACCAGAGGGTGACCTATCCGTGCAAGAACTGCGGCAAGGTGTACAATTATTACTCGAGCTTGGCGAGGCACCTGAAGCACGAGTGCGGTGTCGAGCCGAAGTTCCATTGTCCGTTGTGCCCGTACAAGACGAAGCACAAGTCCAGTCTGAACACCCATTTGAACGGAAGACACATGAAACTGCTGAGCGAGTTCTACGCGATGCCGAACGGAAACAAACTGTCATCCTCCATGGACGCGGGGAACTAG
- Protein Sequence
- MIPCSITLLVANGNNIRSFRERSHFQDGRSRSYRKRYGKCELEHVKTAVEAVANGLSLRKAAKIFCISKSVLHRYSKQGIPVLMEKFSQEDFEGRTSGGFLINQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYKTKHKSSLNTHLNGRHMKLLSEFYAMPNGNKLSSSMDAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00864561;
- 90% Identity
- iTF_00864561;
- 80% Identity
- iTF_00861531;