Hqua010117.1
Basic Information
- Insect
- Halictus quadricinctus
- Gene Symbol
- Sry-delta
- Assembly
- GCA_028454245.1
- Location
- CM052120.1:287073-288945[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-12 8.8e-09 35.0 0.0 8 40 39 71 34 75 0.84 2 2 4.3 5.5e+03 -2.7 0.0 30 38 111 119 111 123 0.84
Sequence Information
- Coding Sequence
- ATGATTCCTTGTTCGATCACCGTGTTATTGGCCAACGGATCGCATTCGCAAGACGCAAGATCAAGATCTTTCAGAAGGAGATACGGCAGGTGCGAGATGGAACACGTGAAGACGGCCGTCGAAGCCGTGGCGAATGGTCTGTCGTTGAGGAAGGCGGCGAAGATCTTCTGCATATCGAAATCCGTTCTGCATCGATATAGCAAACAAGGGATACCGGTTCTGATGGAGAAATTCTCGCAGGAGGATTTCGAAGGGAGGACGTCGGCAGGATATCTGAACTGCCAGAGGGTGACCTATCCGTGCAAGAACTGCGGCAAGGTGTACAATTATTACTCGAGCTTGGCGAGGCACCTGAAGCACGAGTGCGGTGTCGAGCCGAAGTTCCATTGCCCGTTGTGCCCGTACAGGACCAAGCACAAGTCCAGTCTGAACACCCATTTGAACGGAAGACACATGAAACTGCTGAGCGAGTTCTACGCGATGCCGAACGGAAACAAACTCTCATCCTCCATGGACGCGGGGAACTAG
- Protein Sequence
- MIPCSITVLLANGSHSQDARSRSFRRRYGRCEMEHVKTAVEAVANGLSLRKAAKIFCISKSVLHRYSKQGIPVLMEKFSQEDFEGRTSAGYLNCQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYAMPNGNKLSSSMDAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00864561;
- 90% Identity
- iTF_00762886;
- 80% Identity
- iTF_00762886;