Lmar016818.1
Basic Information
- Insect
- Lasioglossum marginatum
- Gene Symbol
- Sry-delta
- Assembly
- GCA_028455795.1
- Location
- CM052253.1:10278135-10279792[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-12 1.1e-08 34.8 0.0 8 40 53 85 48 89 0.84 2 2 4.8 6.6e+03 -2.9 0.0 30 38 125 133 125 137 0.84
Sequence Information
- Coding Sequence
- ATGGGAACAATATACGATCGTTCCGTGAAAGTTTCTTCTACTTTCTTAGATCCCCAGTGCAACCTAACGGCATCGGAGAGATCGCATTTTCAAGACGGAAGATCAAGATCTTACAGAAAGAGGTACGGCAAGTGCGAACTGGAACACGTGAAGACAGCTGTCGAAGCTGTGGCCAATGGCCTGTCGTTGAGGAAAGCAGCGAAGATCTTCTGCATATCGAAATCCGTTCTCCACCGGTATAGCAAACAAGGGATACCGGTTCTGATGGAGAAATTCTCGCAGGAGGATTTCGAAGGGAGGACGTCGGGAGGGTTCCTGATCAATCAGAGGGTGACCTATCCGTGCAAGAACTGCGGCAAGGTGTACAATTATTACTCGAGCTTGGCGAGGCACCTGAAGCACGAGTGCGGTGTCGAGCCGAAGTTCCATTGTCCGTTGTGCCCGTACAAGACGAAGCACAAGTCCAGTCTGAACACCCATTTGAACGGAAGACACATGAAACTGCTGAGCGAGTACTACGCGATGCCGAACGGAAACAAACTGTCATCCTCCATGGACGCGGGGAACTAG
- Protein Sequence
- MGTIYDRSVKVSSTFLDPQCNLTASERSHFQDGRSRSYRKRYGKCELEHVKTAVEAVANGLSLRKAAKIFCISKSVLHRYSKQGIPVLMEKFSQEDFEGRTSGGFLINQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYKTKHKSSLNTHLNGRHMKLLSEYYAMPNGNKLSSSMDAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00864561;
- 90% Identity
- iTF_00864561;
- 80% Identity
- iTF_00864277;