Loen014330.1
Basic Information
- Insect
- Lasioglossum oenotherae
- Gene Symbol
- mod(mdg4)
- Assembly
- GCA_028455765.1
- Location
- CM052294.1:7284735-7287472[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.5e-06 0.005 16.7 0.0 3 38 187 222 185 228 0.77 2 5 4.7e-11 9.3e-08 31.8 0.0 5 39 239 272 236 278 0.90 3 5 0.098 1.9e+02 2.0 0.0 21 34 306 319 292 324 0.81 4 5 1.6 3.2e+03 -1.9 0.0 32 45 334 348 334 348 0.89 5 5 1.6e-11 3.2e-08 33.3 0.1 4 39 350 385 347 390 0.92
Sequence Information
- Coding Sequence
- ATGTCTGAAGTTGTTGCTCAACATGAAATTAATCAGAGCTATTGTTTCAAATGGAATGATTACCACAGTCATTTATCCGATGTAGTTAGACAACTTTTGGAGGAGGATTGCATGGTGGATGTAATACTGGCAGCTGCTGGAGAACGCATTCATGCCCATCGCATAGTCCTCTGCGCTTGTAGCACTTTGTTTCGAGATGTTTTGAGTCAAGTAAACGAGGATCATCCGACAATAATATTAAGCGATATATCAGCACAAGATATCAAGTGTATTATTGAATTTATTTATCATGGGGAAGTGAGGGTAGCAGTGGAGAATATTAGCAGTTTGCTGGAAGCTGCACGGTCCTTGAAAATATGTGGTCTTATCGAGATTAATGGACTAAACGAGATTCATTCAACTGTGAGTGCTAAAGACTACAATGATAACAGCCAAGAGCCAATGACTGTTATCGATGAGTCAGACGAGAATGTTATGAATGCGTTGCAATACGGATATGAAGATTTAGAAGATCAGCAAGAGCAGAGGCGGGATACAATAAAAAGAGAGTATAGCGACGACATGTTAGCATCCGCTATCGACGGTTTAAAATCAGGACAAACATTAATAGAAGCTTCAACTAAGCATAACGTACCACGTTCGACATTGTACATGCGTGCAAAGGCGCTAGGTGTACATTTAACTGCCACAAGGAATGAATATCCTGCCGAGTGTATGAAGGCTGCTATAAATGCTGTGGTTGGTGGATCCAGTTTGCAACACGCATCGGAGATGTTCAGTATACCCAAGACTGTTCTATGGAGAAGAATTCAGAAGGAAGGGTATAAGATTCTGCGCTCCGAGATGAAGATGACTTACGGCGTTGACAGGCGGGAAGCTGCGCTGAAAGCTTTGGAAAGGGGCGAGAAGCTGACTAAAGTTGCGCTCGAATTTAAAATTCCGAAGACCACTTTATTCAGAGACAAAGCTCGCTTAGTGGACGAGGGAAAGCTGCCGTTGTCGTTCTGGAAGAAGCGCAAGACAGAAAATGAAGAGTTGAAGAGATCCCGTTTGGAGGAAGCTGTTGCGGCCTGTAAAGGAGGGAAAATGTCGCAAGCGGCTGCGTCTATGACTTATCGTATTCCTAAAACGACGATATGGAGACGACTCCAACAGGACGGCAAGAAATCCGATCGTTTGCTGAACTCCAGAAAACAACGGATAACAAATTCGAAACAGAATGCCACGGTGAAGAGCCAAGAGGGATCTGACTTCTCGTACTGCGAGGTGTCCTCGGAGATTCCTATAACTTACATAGATGAGAATAGCATAGCTGAGGATTCTGTGATAATATTAACAGCGGACGACATGGATGGACTGAATTTAGAAGAGGGACGACAAATTATTGTTAACTCTGCGTCTGTACAAGAATATGTTCCCTGTTCCATAAGCATCGAGGAGAACTCGAATTACTCGCAAACGGAAAGTTAA
- Protein Sequence
- MSEVVAQHEINQSYCFKWNDYHSHLSDVVRQLLEEDCMVDVILAAAGERIHAHRIVLCACSTLFRDVLSQVNEDHPTIILSDISAQDIKCIIEFIYHGEVRVAVENISSLLEAARSLKICGLIEINGLNEIHSTVSAKDYNDNSQEPMTVIDESDENVMNALQYGYEDLEDQQEQRRDTIKREYSDDMLASAIDGLKSGQTLIEASTKHNVPRSTLYMRAKALGVHLTATRNEYPAECMKAAINAVVGGSSLQHASEMFSIPKTVLWRRIQKEGYKILRSEMKMTYGVDRREAALKALERGEKLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKRSRLEEAVAACKGGKMSQAAASMTYRIPKTTIWRRLQQDGKKSDRLLNSRKQRITNSKQNATVKSQEGSDFSYCEVSSEIPITYIDENSIAEDSVIILTADDMDGLNLEEGRQIIVNSASVQEYVPCSISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00864739; iTF_00861793; iTF_00865922; iTF_00183203; iTF_00965955; iTF_00762468; iTF_00966116; iTF_00184037; iTF_00863365; iTF_00024711; iTF_00864073; iTF_00861994; iTF_00860300; iTF_00866796; iTF_00862478; iTF_00763152; iTF_00865232; iTF_00862675; iTF_00865427; iTF_00183860; iTF_00860500; iTF_00863189; iTF_00183382; iTF_00024536; iTF_00861048; iTF_00861273; iTF_00762650; iTF_00863868; iTF_00763327; iTF_00866111; iTF_00866623;
- 80% Identity
- iTF_00864739;