Basic Information

Insect: Halictus rubicundus
Gene Symbol: ttk
Assembly: GCA_028454235.1
Location: CM052178.1:7646797-7649071[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.62 1.2e+03 -0.7 0.3 30 42 180 193 180 196 0.69

2 6 2.4e-06 0.0045 16.6 0.0 3 38 201 236 199 242 0.77

3 6 4.4e-11 8.5e-08 31.7 0.0 5 39 253 286 250 292 0.90

4 6 0.092 1.8e+02 1.9 0.0 21 34 320 333 306 338 0.81

5 6 1.5 2.9e+03 -2.0 0.0 32 45 348 362 348 362 0.89

6 6 1.5e-11 2.9e-08 33.2 0.1 4 39 364 399 361 404 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.62	1.2e+03	-0.7	0.3	30	42	180	193	180	196	0.69
2	6	2.4e-06	0.0045	16.6	0.0	3	38	201	236	199	242	0.77
3	6	4.4e-11	8.5e-08	31.7	0.0	5	39	253	286	250	292	0.90
4	6	0.092	1.8e+02	1.9	0.0	21	34	320	333	306	338	0.81
5	6	1.5	2.9e+03	-2.0	0.0	32	45	348	362	348	362	0.89
6	6	1.5e-11	2.9e-08	33.2	0.1	4	39	364	399	361	404	0.92

Sequence Information

Coding Sequence: ATGTCTGAAGTTGTTGCTCAACATGAAATTAATCAGAGCTATTGTTTCAAATGGAATGATTACCACAGTCATTTATCTGATGTAGTTAGACAACTTTTGGAGGAGGATTGCATGGTGGATGTAATACTGGCAGCTGCTGGAGAACGCATTCATGCCCATCGCATAGTCCTCTGCGCTTGTAGCACTTTGTTTCGAGATGTTTTAAGTCAAGTAAATGAGGATCATCCGACAATAATACTAAGCGATATATCAGCACAAGACATCAAGTCTATTATTGAATTTATTTATCATGGAGAAGTGAGAGTAGCAGTGGAAAATATTAGCAGTTTACTGGAAGCTGCGCGATCTTTGAAAATATGTGGTCTTATCGAGATTAATGGACTAAATGAGATTCACTCGGCTGTGAGTTCTAAAGACTACAATGATAACAGCGAAGAGCCAATGACTGTTATCAATGAGTCAGACGAGAATGTTATGAATGCATTGCAATACGGATATGAAGATTTAGAAGATCAACAAGAGCAGAGGTTTGCAGAGAATTCCACGCTGAGTAAAAAAAAGAAACGCAGGCGGGATACAATAAAAAGAGAGTATAGCGACGACATGTTAGCATCTGCAATCGACGGCTTAAAGTCGGGGCAAACGTTAATAGAAGCTTCAACTAAACATAATGTACCACGTTCAACATTGTACATGCGTGCAAAGGCGCTAGGTGTACATTTAACTGCCACAAGGAACGAATATCCTGCTGAGTGCATGAAGGCTGCCATAAATGCTGTAGTTGGTGGATCCAGCTTGCAGCACGCATCGGAAATGTTCAGTATACCCAAGACTGTTCTATGGAGAAGAATTCAGAAGGAGGGATATAAGATACTACGCTCGGAAATGAAGATGACTTATGGCGTTGATAGGCGGGAAGCTGCGCTGAAAGCTTTAGAAAGGGGCGAGAAGTTGACTAAAGTTGCGCTCGAATTTAAAATTCCAAAAACCACTCTATTCAGAGACAAAGCTCGCTTAGTGGACGAGGGAAAGCTGCCGTTGTCATTTTGGAAGAAACGCAAAACGGAGAATGAAGAGTTGAAGAGATCCCGCTTGGAGGAAGCTGTTGCAGCCTGTAAAGGAGGGAAAATGTCGCAAGCGGCTGCGTCTATGACCTACCGTATTCCTAAAACAACGATATGGAGACGACTCCAACAGGACGGCAAGAAATCAGACCGTTTGTTGAATTCGAGAAAACAACGGATAACAAATTCGAAACAGAACGCGGCAGTGAAGAACCAAGAGGGATCTGACTTCTCATATTGCGAGGTGTCCTCAGAAATTCCTATAACTTACATAGATGAAAATAGCATAGCTGAGGATTCTGTAATAATATTAACAGCGGACGACATGGATGGACTGAATTTGGAAGAGGGACGACAAATTATTGTTAACTCTGGGACTGTACAAGAATATGTTCCATGTTCCATAAGCATCGAAGAGAACTCGAATTACTCGCAAACGGAAAGTTAG
Protein Sequence: MSEVVAQHEINQSYCFKWNDYHSHLSDVVRQLLEEDCMVDVILAAAGERIHAHRIVLCACSTLFRDVLSQVNEDHPTIILSDISAQDIKSIIEFIYHGEVRVAVENISSLLEAARSLKICGLIEINGLNEIHSAVSSKDYNDNSEEPMTVINESDENVMNALQYGYEDLEDQQEQRFAENSTLSKKKKRRRDTIKREYSDDMLASAIDGLKSGQTLIEASTKHNVPRSTLYMRAKALGVHLTATRNEYPAECMKAAINAVVGGSSLQHASEMFSIPKTVLWRRIQKEGYKILRSEMKMTYGVDRREAALKALERGEKLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKRSRLEEAVAACKGGKMSQAAASMTYRIPKTTIWRRLQQDGKKSDRLLNSRKQRITNSKQNAAVKNQEGSDFSYCEVSSEIPITYIDENSIAEDSVIILTADDMDGLNLEEGRQIIVNSGTVQEYVPCSISIEENSNYSQTES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118108;
90% Identity: iTF_00864555;
80% Identity: iTF_00763327;