Basic Information

Insect: Agapostemon virescens
Gene Symbol: ttk
Assembly: GCA_028453745.1
Location: CM052094.1:1670726-1673455[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 2.3 5.1e+03 -2.0 0.3 31 41 181 192 181 196 0.69

2 6 3.7e-06 0.0079 16.6 0.0 3 38 201 236 199 242 0.77

3 6 7.7e-11 1.7e-07 31.6 0.0 5 39 253 286 250 292 0.90

4 6 0.14 3.1e+02 1.9 0.0 21 34 320 333 306 338 0.81

5 6 2.3 5.1e+03 -2.0 0.0 32 45 348 362 348 362 0.89

6 6 9.8e-12 2.1e-08 34.4 0.1 4 39 364 399 361 404 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	2.3	5.1e+03	-2.0	0.3	31	41	181	192	181	196	0.69
2	6	3.7e-06	0.0079	16.6	0.0	3	38	201	236	199	242	0.77
3	6	7.7e-11	1.7e-07	31.6	0.0	5	39	253	286	250	292	0.90
4	6	0.14	3.1e+02	1.9	0.0	21	34	320	333	306	338	0.81
5	6	2.3	5.1e+03	-2.0	0.0	32	45	348	362	348	362	0.89
6	6	9.8e-12	2.1e-08	34.4	0.1	4	39	364	399	361	404	0.92

Sequence Information

Coding Sequence: ATGTCTGAAGTTGTTACTCAACATGAAATTAATCAGAGCTATTGTTTCAAATGGAATGATTACCACAGTCACTTATCCGATGTAGTTAGACAACTTTTGGAGGAGGATTGCATGGTGGATGTAATACTGGCAGCTGCTGGAGAACGCATTCATGCCCATCGTATAGTTCTCTGCGCTTGTAGCACTTTGTTTCGAGATGTTTTAAGTCAAGTAAATGAGGACCATCCGACAATAATACTAAGCGATATATCAGCACAAGACATCAAGTCTATTATTGAATTTATTTATCATGGGGAAGTGAGAGTAGCAGTGGAGAATATTAGCAGTTTACTGGAAGCTGCGCGATCTTTGAAAATTTGTGGTCTTATCGAGATTAATGGACTAAATGAGATTCATTCAGCTATAAGTAATAAAGACTATAACGACAATAGCGAAGAGCCAATGACTGTTATCAATGAGTCAGATGAGAATGTTATGAATGCTCTGCAGTATGGATATGAAGATTTAGAAGACCAGCAAGAGCAGAGGTTCACTGATGGTTCTACATTGAGTAAAAAAAAGAAACGTAGGAGGGATACAATAAAAAGAGAATACAGCGACGACATGTTAGCATCTGCAATTGATGGCTTGAAGTCAGGACAAACATTAATAGAAGCTTCAACTAAACATAATGTACCACGTTCGACGTTGTACATGCGAGCAAAAGCGTTAGGTGTACATTTAACTGCCACAAGGAATGAATATCCTGCTGAGTGCATGAAGGCTGCCATAAATGCTGTAATTGGTGGATCCAGTTTACAGCATGCATCAGAAATGTTTAGTATACCGAAGACTGTTTTATGGAGAAGAATTCAGAAGGAGGGGTATAAAATACTACGTTCCGAAATGAAGATGACTTACGGTGTTGATAGGCGAGAGGCTGCGCTGAAAGCCTTAGAAAGGGGCGAGAAGTTAACTAAAGTTGCGCTTGAATTCAAAATTCCAAAGACTACTCTATTTCGAGATAAAGCTCGCTTAGTAGATGAGGGAAAGCTACCGTTGTCATTTTGGAAGAAACGCAAAACGGAGAATGAGGAGTTGAAGAGATCGCGTTTGGAGGAAGCTGTAGCAGCCTGTAAAGGAGGGAAAATGTCGCAAGCGGCTGCGTCGATGACCTATCATATTCCTAAAACAACCATATGGAGACGACTTCAACAAGACGGCAAAAAATCGGACCGTTTGTTGAATTCTAGAAAACAACGGATAACAAATTCTAAACAGAACGCGGTAGCGAAGAACCAAGAGGGATCTGACTTTACGTACTGCGAGGTGTCCTCAGAAATTCCTATAACTTACATAGATGAAAATAGCATAGCTGAGGATTCTGTGATAATATTAACAGCGGACGACATGGATGGACTGAATTTAGAGGAGGGTCGACAAATTATTGTTAACTCTGGGTCTGTACAAGAATATGTTCCGTGTTCTATAAGCATTGAAGAGAACTCGAATTACTCGCAAACGGAAAGTTAG
Protein Sequence: MSEVVTQHEINQSYCFKWNDYHSHLSDVVRQLLEEDCMVDVILAAAGERIHAHRIVLCACSTLFRDVLSQVNEDHPTIILSDISAQDIKSIIEFIYHGEVRVAVENISSLLEAARSLKICGLIEINGLNEIHSAISNKDYNDNSEEPMTVINESDENVMNALQYGYEDLEDQQEQRFTDGSTLSKKKKRRRDTIKREYSDDMLASAIDGLKSGQTLIEASTKHNVPRSTLYMRAKALGVHLTATRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYKILRSEMKMTYGVDRREAALKALERGEKLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKRSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSDRLLNSRKQRITNSKQNAVAKNQEGSDFTYCEVSSEIPITYIDENSIAEDSVIILTADDMDGLNLEEGRQIIVNSGSVQEYVPCSISIEENSNYSQTES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118108;
90% Identity: iTF_00864555;
80% Identity: iTF_00024711;