Lwla008279.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388049.1:2347171-2363092[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-05 0.007 16.7 0.0 7 35 46 73 42 78 0.88 2 2 0.05 21 5.6 0.0 7 34 205 231 202 242 0.84
Sequence Information
- Coding Sequence
- ATGGACCACGGGATACCTCTAAACATCCACGCGAGACCTCGCCTGGTAGGAAGAAGACCGAACGAGATAGTGAATATAGAGACTGACGTTTTTCAAGAGAAATCTTACAAACAATATTCGTCGCAACATCTTCGAGACGCCCTCATAGCTGTGAAAAAAGGGTACAGTGTATACGCAGCGTCAAATAAGTATGGAGTCCCGAGAAAAACTTTGAGAAATTGGATGGAGAAGTACGATATTAAGAGTCAGTTTTCCAAAGATTTCCCGATCGCAAACGTGCAGTGTCAGTACGACAGCCCGTCCGACACGGAGACGGACCGGCACGGACTCGCACACGTTGCAAGACCGCCGGACGATCACACGTACGACACGCGCGACGAACCGCCCGCGTTCATCATACGACACGTCAATCATGCTCTACATCTCCAAAGTCCCCCTAACTTCCGGGAGATAAGGCCTAAAATTATGACGATAGGGCCCGGCTCCTCGGCATCAGTCAACGTCATACATGTGGGCGACCAGGCGCAGGCTGGCAGTGTGCTGCTCCCCTCGCAGCCCTCGTCGGAGTTCAACATCAACAAGCGGATCCGGCGCAGCGAGGTAGTGTTGCGTCAGGCAGCCGACTGCGTCAGCCGCGGACTGACATTCCAGACTGTGTCAGAGCAGTTCAACATACCCATCTCTACTATACGATTCTTCATGGCACGGAAGGGGATTCTGCCGCGCCGTCGGCGGGGGCGTAGCACTCAGCCCACTAGGCCTTATAGTAGTCCGGAGCCTCCGTTCCACATGCAGCACTTCAAACTACCCGACATGGTCGCGTTACGAGCTGATGATGAAGACCCACAGCCGCAGTAA
- Protein Sequence
- MDHGIPLNIHARPRLVGRRPNEIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKDFPIANVQCQYDSPSDTETDRHGLAHVARPPDDHTYDTRDEPPAFIIRHVNHALHLQSPPNFREIRPKIMTIGPGSSASVNVIHVGDQAQAGSVLLPSQPSSEFNINKRIRRSEVVLRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRSTQPTRPYSSPEPPFHMQHFKLPDMVALRADDEDPQPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01084198;
- 90% Identity
- iTF_01084198; iTF_01525956; iTF_01230509; iTF_01534766; iTF_00037758; iTF_00172839; iTF_00124195; iTF_00121381; iTF_00036626; iTF_00363965; iTF_00042571; iTF_00685379; iTF_00745632; iTF_01094860; iTF_01093033; iTF_01192654; iTF_00907824; iTF_01440978; iTF_01439873; iTF_00928627; iTF_00711797; iTF_01532985; iTF_01531955; iTF_00758101; iTF_01533877; iTF_00040758; iTF_00039747; iTF_00043433; iTF_00446071; iTF_00447081; iTF_01246843; iTF_00120455; iTF_00973727;
- 80% Identity
- -