Alit037877.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424517.1:1060391-1071229[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-05 0.012 16.7 0.0 7 35 46 73 42 78 0.88 2 2 0.077 38 5.5 0.0 7 34 202 228 199 237 0.85
Sequence Information
- Coding Sequence
- ATGGACCACGGCATCCCTTTAAACATCCATGCAAGACCGCGACTAGTTGGCCGACGACCGAACGAGATCGTCAACATAGAAACTGATGTTTTTCAAGAGAAATCTTATAAGCAATACTCGTCGCAGCATCTCAGAGACGCCTTAATCGCCGTGAAAAAAGGTTACAGTGTATATGCAGCGTCAAATAAATACGGAGTACCAAGGAAAACTTTACGGAATTGGATGGAAAAGTATGATATTAAGAGTCAGTTTTCTAAAGACTTCCCGATAGCAAACGTGCAGTGTCAATACGATAGTCCATCGGACACGGAACCGGACCGGCCCGGAGCGATCGCACGACCGCCGGACGACCACACGTACGACACGCGGGACGAGCCGCCCGCGTTCATCATACGACATGTTAATAATGCCCTACACCTCCAAAGCCCCCCTCAGTTCCGTGAGATCAGGCCTAAGATCATGACGATAGGCCCGGGCTCCTCCGCCTCCGTCAACGTCATACATGTGGGCGACCAGGCGCAGCCGCCTAGTATGCTACTCCCCTCCCAGCCATCAGAGTTTAACATCAACAAGCGGATCCGACGCAGCGAGGTAGTGTTACGTCAGGCCGCGGACTGCGTCAGTCGCGGACTGACGTTCCAGACTGTCTCCGAGCAGTTCAACATACCCATTTCAACCATAAGATTCTTTATGGCGCGGAAAGGTATTTTGCCGCAACGCAGACGAGGACGCAGTACTCAGCCAACTCGTCCCTGCAATAGTCCGGAGCCTCCCTTCCACATGCAACACTTCAAACTGCCCGACATGGTAGCTTTAAgagctgatgatgaagacccGCAGCCACAGTAA
- Protein Sequence
- MDHGIPLNIHARPRLVGRRPNEIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKDFPIANVQCQYDSPSDTEPDRPGAIARPPDDHTYDTRDEPPAFIIRHVNNALHLQSPPQFREIRPKIMTIGPGSSASVNVIHVGDQAQPPSMLLPSQPSEFNINKRIRRSEVVLRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPQRRRGRSTQPTRPCNSPEPPFHMQHFKLPDMVALRADDEDPQPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00667404;
- 90% Identity
- iTF_00851740;
- 80% Identity
- -