Asor021579.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000063.1:23936-33650[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.3e-06 0.0076 16.7 0.0 7 35 46 73 42 78 0.88 2 2 0.027 22 5.6 0.0 7 34 202 228 199 239 0.84
Sequence Information
- Coding Sequence
- ATGGACCACGGGATTCCTTTAAACATCCATGCAAGGCCGCGACTAGTTGGAAGACGACCGAACGAGATCGTCAACATAGAAACCGATGTTTTTCAAGAGAAATCTTATAAGCAATATTCGTCGCAACATCTTAGAGACGCCCTAATCGCAGTAAAAAAAGGTTACAGTGTATACGCCGCCTCAAATAAGTACGGAGTGCCAAGGAAAACTTTACGGAATTGGATGGAAAAGTATGATATTAAGAGTCAGTTTTCCAAAGACTTCCCGATAGCAAACGTGCAGTGTCAGTACGACAGTCCATCGGACACGGAACCGGACCGGCACGGAGCGATCTCACGACCGCCGGACGACCACACGTACGACACGCGCGACGAGCCGCCCGCGTTCATCATACGACATGTTAATAATGCCCTACACCTACAAAGCTCCCCACACTTCCGCGAGATCAGGCCTAAGATCATGACGATCGGGCCGGGCTCTTCGGCTTCAGTTAATGTCATACATGTGGGGGACCAGGCGCAGCCTCCCAGTATGCTGCTCCCGTCCCAGCCGTCAGAGTTCAACATCAACAAGCGGATCCGACGCAGTGAGGTTGTGTTACGTCAGGCCGCAGACTGCGTCAGTCGCGGACTGACCTTCCAGACTGTTTCCGAGCAGTTTAATATACCTATATCTACTATACGATTCTTCATGGCGCGTAAAGGTATTCTGCCACGACGTAGACGAGGCCGCAGTACTCAGCCAACTCGACCCTGCAGTAGTCCGGAGCCTCCCTTCCACATGCAACACTTCAAACTGCCCGACATGGTCGCGTTGAGAGCTGACGATGAAGACCAGCCACCGCAGTAA
- Protein Sequence
- MDHGIPLNIHARPRLVGRRPNEIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKDFPIANVQCQYDSPSDTEPDRHGAISRPPDDHTYDTRDEPPAFIIRHVNNALHLQSSPHFREIRPKIMTIGPGSSASVNVIHVGDQAQPPSMLLPSQPSEFNINKRIRRSEVVLRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRSTQPTRPCSSPEPPFHMQHFKLPDMVALRADDEDQPPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00667404;
- 90% Identity
- iTF_00851740;
- 80% Identity
- iTF_00121381;